View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_182 (Length: 240)
Name: NF9612A_low_182
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_182 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37346191 - 37346417
Alignment:
| Q |
1 |
gtatgttgaattattatcccaaaacacccatcaaaggttcatcatgtcaatannnnnnnnactaaaacaattaataattaaatttagctcaaatttagag |
100 |
Q |
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| T |
37346191 |
gtatgttgaattattatcctaaaacacccatcaaagtttcatcatgtcaatattatttttactaaaacaattaataattaaatttagctcaaatttagag |
37346290 |
T |
|
| Q |
101 |
gatacctttaaagacaatactatagacaatactgatacttcatttttaatttcttggtttctttcggatgaagaatatgagctcacaaggatatcaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346291 |
gatacctttaaagacaatactatagacaatactgatacttcatttttaatttcttggtttctttcggatgaagaatatgagctcacaaggatatcaattg |
37346390 |
T |
|
| Q |
201 |
cttgttctatggaaattgttccagtct |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37346391 |
cttgttctatggaaattgttccagtct |
37346417 |
T |
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