View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_184 (Length: 239)
Name: NF9612A_low_184
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_184 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 36075086 - 36075318
Alignment:
| Q |
3 |
agagaagaaaagggg-aggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaagataattatc |
101 |
Q |
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| T |
36075086 |
agagaagaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatc |
36075185 |
T |
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| Q |
102 |
tgaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcactaagaacaaaataattgaataagtcgagagaaat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
36075186 |
tgaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtagagagaaat |
36075285 |
T |
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| Q |
202 |
ttaaatctgagtgtctcaaaagatgaaacatct |
234 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36075286 |
ttaaatctgagtgtctcaaaagatgaaacatct |
36075318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 42169063 - 42169295
Alignment:
| Q |
3 |
agagaagaaaag-gggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaagataattatc |
101 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
42169063 |
agagaagaaaagagggaggaaaatgcagtgttgattttagagagagaaagcggtactggttactttggttgtatagagataaagtgacaaaataattatc |
42169162 |
T |
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| Q |
102 |
tgaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcactaagaacaaaataattgaataagtcgagagaaat |
201 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
42169163 |
tgaatttgttacattcatctttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaagaagtagagagaaat |
42169262 |
T |
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| Q |
202 |
ttaaatctgagtgtctcaaaagatgaaacatct |
234 |
Q |
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| T |
42169263 |
ttaaatctgagtgtctcaaaagatgaaacatct |
42169295 |
T |
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Back To:
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