View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_186 (Length: 237)
Name: NF9612A_low_186
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_186 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 5197668 - 5197462
Alignment:
| Q |
30 |
gaacatcaaactgtc-gaaattaaagctaaagataaaaattataatatccaaatatttgcgactccacat-----ttcaacaggtactatggacactcat |
123 |
Q |
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| T |
5197668 |
gaacatcaaattgtctgaaattaaaggtaaatataaaaattacaatatgcaaatatttgagactccacataatgtttcaacaggaactatggccactctt |
5197569 |
T |
|
| Q |
124 |
caataaaatggaaaatttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatga |
223 |
Q |
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||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
5197568 |
caatacaatggaaaagttggaaagaatctacgcataaacttactgatgtaataaaaccaggccatgcgccaacgtggattgatgcacaacactgttatga |
5197469 |
T |
|
| Q |
224 |
aggccaa |
230 |
Q |
| |
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||||||| |
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| T |
5197468 |
aggccaa |
5197462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 4840618 - 4840808
Alignment:
| Q |
46 |
aaattaaagctaaagataaaaattataatatccaaatatttgcgactccacatttcaacaggt---actatggacactcatcaataaaatggaaaatttg |
142 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||| | || | ||||||||||||| | |||| ||||||||| ||| |
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| T |
4840618 |
aaattaaagctaaagataaaaattacaatatccaaatattttagactccacat----aaagtttaaactatggacactctttaatacaatggaaaagttg |
4840713 |
T |
|
| Q |
143 |
gaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaaggccaacaatatt |
237 |
Q |
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| T |
4840714 |
gaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggctaacaatatt |
4840808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 5174904 - 5174714
Alignment:
| Q |
46 |
aaattaaagctaaagataaaaattataatatccaaatatttgcgactccacatttcaacaggt---actatggacactcatcaataaaatggaaaatttg |
142 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||||| |||||||||| | || | ||||||||||||| |||||| ||||||||| ||| |
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| T |
5174904 |
aaattaaagctaaaggtaaaaattacaatatccaaatatttgagactccacat----aaagtttaaactatggacactcttcaatacaatggaaaagttg |
5174809 |
T |
|
| Q |
143 |
gaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaaggccaacaatatt |
237 |
Q |
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| T |
5174808 |
gaaaaaatctacgcataaacttactgatataataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgagggccaacaatatt |
5174714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 5184264 - 5184063
Alignment:
| Q |
35 |
tcaaactgtc-gaaattaaagctaaagataaaaattataatatccaaatatttgcgactccacat-----ttcaacaggtactatggacactcatcaata |
128 |
Q |
| |
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|||||||||| | |||||| | |||| ||||||| || | ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |
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| T |
5184264 |
tcaaactgtctggaattaacggtaaatataaaaaatacagtatccaaatattttagactccacataaagtttcaacaggaactatggacactcatcaata |
5184165 |
T |
|
| Q |
129 |
aaatggaaaatttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaaggcc |
228 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||| |
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| T |
5184164 |
taatggaaaagatggaaagaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgatgcccaacacagttatgaaggcc |
5184065 |
T |
|
| Q |
229 |
aa |
230 |
Q |
| |
|
|| |
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|
| T |
5184064 |
aa |
5184063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 5215810 - 5215607
Alignment:
| Q |
33 |
catcaaactgtc-gaaattaaagctaaagataaaaattataatatccaaatatttgcgactccacat-----ttcaacaggtactatggacactcatcaa |
126 |
Q |
| |
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|||||||||||| |||||||||| |||| |||||||||| |||||||||||||||| |||| ||| | ||||||||| | | ||||||| |||| |
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| T |
5215810 |
catcaaactgtctgaaattaaaggtaaatataaaaattacaatatccaaatatttgagacttcacttgaagtttcaacaggaataacagacactcttcaa |
5215711 |
T |
|
| Q |
127 |
taaaatggaaaatttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaagg |
226 |
Q |
| |
|
|| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
5215710 |
tacaatggaaacgttggaaaaattttacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgacgcacaacactgttatgaagg |
5215611 |
T |
|
| Q |
227 |
ccaa |
230 |
Q |
| |
|
|||| |
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|
| T |
5215610 |
ccaa |
5215607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 4855106 - 4855303
Alignment:
| Q |
33 |
catcaaactgtc-gaaattaaagctaaagataaaaattataatatccaaatatttgcgactccacat-----ttcaacaggtactatggacactcatcaa |
126 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||| |||| ||||||||||| |||||||||| |||||||||||||| |||||||| | || |
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|
| T |
4855106 |
catcaaactgtctgaaattaaagttaaatataaaaattacaatacccaaatatttgagactccacataaagtttcaacaggtactacggacactctttaa |
4855205 |
T |
|
| Q |
127 |
taaaatggaaaatttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaagg |
226 |
Q |
| |
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|| ||||||||| |||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| |
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|
| T |
4855206 |
tacaatggaaaagttggaaaaaagatacctacaaacttactaatgtaataaaaccaggccaaacgccaacgtggattgatg--caacactgttatgaagg |
4855303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 5161985 - 5161775
Alignment:
| Q |
33 |
catcaaactgtc-gaaattaaagctaaagataaaaattataatatccaaatatttgcgactccacat-----ttcaacaggtactatggacactcatcaa |
126 |
Q |
| |
|
|||||||||||| |||||||| | |||| |||||||||| |||||||||||||||| |||||||| | |||||||||||||| | |||||| ||| |
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| T |
5161985 |
catcaaactgtctgaaattaacgataaatataaaaattacaatatccaaatatttgagactccacgtaaagtttcaacaggtactacgtacactcttcag |
5161886 |
T |
|
| Q |
127 |
taaaatggaaaatttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacatgcattgatgcacaacactgttatgaagg |
226 |
Q |
| |
|
|| ||||||||| |||||||||| || ||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||| |
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|
| T |
5161885 |
tacaatggaaaagttggaaaaaaaaatcgtgcaaacttactaatgtaataaaaccaagccatacgccaacgagcattgatacacaacactgttacgaagg |
5161786 |
T |
|
| Q |
227 |
ccaacaatatt |
237 |
Q |
| |
|
||||||||||| |
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|
| T |
5161785 |
ccaacaatatt |
5161775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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