View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_189 (Length: 236)
Name: NF9612A_low_189
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_189 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42548414 - 42548179
Alignment:
| Q |
1 |
agaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtcagt |
100 |
Q |
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| T |
42548414 |
agaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtcagt |
42548315 |
T |
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| Q |
101 |
tccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaccaaagcattgaggaaaataatgttattgttaattgtacaaagaag |
200 |
Q |
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| T |
42548314 |
tccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaacaaagcattgaggaaaataatgttaatgttaattgttcaaagaag |
42548215 |
T |
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| Q |
201 |
cttaacttttgcaaggtggttgaggattggatacaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42548214 |
cttaacttttgcaaggtggttgaggattggatacaa |
42548179 |
T |
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