View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_19 (Length: 411)
Name: NF9612A_low_19
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 11592816 - 11592415
Alignment:
| Q |
1 |
taacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592816 |
taacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatta |
11592717 |
T |
|
| Q |
101 |
gaaaaagggaaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatgg |
200 |
Q |
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| T |
11592716 |
gaaaaaggcaaagaaatgggacaaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatgg |
11592617 |
T |
|
| Q |
201 |
agagagttgactcattgatgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtc |
300 |
Q |
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| T |
11592616 |
agagagttgaatcattgatgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtc |
11592517 |
T |
|
| Q |
301 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgggttgttgggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11592516 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
11592417 |
T |
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| Q |
401 |
ca |
402 |
Q |
| |
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|| |
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| T |
11592416 |
ca |
11592415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 11645303 - 11645704
Alignment:
| Q |
1 |
taacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645303 |
taacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatta |
11645402 |
T |
|
| Q |
101 |
gaaaaagggaaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatgg |
200 |
Q |
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|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11645403 |
gaaaaaggcaaagaaatgggacaaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatgg |
11645502 |
T |
|
| Q |
201 |
agagagttgactcattgatgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11645503 |
agagagttgaatcattgatgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtc |
11645602 |
T |
|
| Q |
301 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgggttgttgggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11645603 |
tagggttatgccaagacaacaatttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggt |
11645702 |
T |
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| Q |
401 |
ca |
402 |
Q |
| |
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|| |
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|
| T |
11645703 |
ca |
11645704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37180797 - 37181056
Alignment:
| Q |
1 |
taacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatta |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
37180797 |
taacaatgttgttgatgcagttgataatgttaaagagaaagtttatgataaagctaatgatgtttatgataatgttcaagattccacaaaagggtcattg |
37180896 |
T |
|
| Q |
101 |
gaaaaagg-gaaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatg |
199 |
Q |
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|||||||| ||| | ||||||||||| || ||||||||||||| | ||||||||||| | |||||||||| ||||||||| |||||||||| ||| |
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| T |
37180897 |
gaaaaaggaaaaaaaaatgggacaaacattgaaggaacatgttggt---aacgtgaccgagacataagacggtgtaaagaagtttgtgtcattatctatg |
37180993 |
T |
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| Q |
200 |
gagagagttgactcattgatgagtttgttgaatttatt-gggattttcaagtggttatggaat |
261 |
Q |
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||||||||||| ||||||| || ||||||||| || ||||||| |||||||||||||||| |
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| T |
37180994 |
gagagagttgaatcattgacgaaagagttgaatttgttagggatttgcaagtggttatggaat |
37181056 |
T |
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