View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_2 (Length: 614)
Name: NF9612A_low_2
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 22 - 510
Target Start/End: Complemental strand, 13882022 - 13881527
Alignment:
| Q |
22 |
tcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882022 |
tcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattg |
13881923 |
T |
|
| Q |
122 |
gttt-ctctgtagtttcaa-------gttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgt |
213 |
Q |
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|||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881922 |
gttttctctgtagtttcaactttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgt |
13881823 |
T |
|
| Q |
214 |
ctaaattatacccttatataaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881822 |
ctaaattatacccttatataaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
13881723 |
T |
|
| Q |
314 |
accattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcat |
413 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13881722 |
accattcattctttctgacacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcat |
13881623 |
T |
|
| Q |
414 |
atgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaatatgc |
510 |
Q |
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| T |
13881622 |
atg-aaaatcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattgaatatgc |
13881527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 254 - 509
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
| Q |
254 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta |
352 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||| | |||||| ||| |
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| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
|
| Q |
353 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
452 |
Q |
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| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
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| Q |
453 |
tttaccacataaatgcttgtg---ttctacacgattagaacatatatcgtattgaatatg |
509 |
Q |
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|||| ||| ||||||| ||| |||| || ||| |||||||||||||||||||||||| |
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| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 510
Target Start/End: Original strand, 14389488 - 14389688
Alignment:
| Q |
308 |
attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat |
407 |
Q |
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|||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| |||||||| |
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| T |
14389488 |
attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat |
14389585 |
T |
|
| Q |
408 |
atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaata |
507 |
Q |
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| T |
14389586 |
atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaata |
14389685 |
T |
|
| Q |
508 |
tgc |
510 |
Q |
| |
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||| |
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|
| T |
14389686 |
tgc |
14389688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 13881506 - 13881460
Alignment:
| Q |
541 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
587 |
Q |
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| T |
13881506 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
13881460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
376 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
456 |
Q |
| |
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||||||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||| |||| |||| ||||||||||| |
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| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
374 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
430 |
Q |
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| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 506
Target Start/End: Complemental strand, 29623333 - 29623198
Alignment:
| Q |
374 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtg |
473 |
Q |
| |
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| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtg |
29623234 |
T |
|
| Q |
474 |
---ttctacacgattagaacatatatcgtattgaat |
506 |
Q |
| |
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| T |
29623233 |
ttcttcttcatgatgagaacatatatcgtattgaat |
29623198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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