View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_20 (Length: 407)
Name: NF9612A_low_20
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 40442098 - 40442486
Alignment:
| Q |
13 |
atactgatgcatctttacttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaagtgga |
112 |
Q |
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| T |
40442098 |
atactgatgcatctttacttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaagtgga |
40442197 |
T |
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| Q |
113 |
atccacttgtcttaactcttatccctggaatctgtaggtacaacacaaccacacaatcttttaccaacttgatcaatattttggacatccttgagattga |
212 |
Q |
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| T |
40442198 |
atccacttgtcttaactcttatccctggaatctgtaggcacaacacaaccacacaatcttttaccaacttgatcaatattttggacatccttgtgattga |
40442297 |
T |
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| Q |
213 |
ggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatcctaagccatgaaaacaatatctatatagacttgctaatttttcaa |
312 |
Q |
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| T |
40442298 |
ggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatcctaagccatgaaaacaatatctatatagacttgctaatttttcaa |
40442397 |
T |
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| Q |
313 |
atgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgcttttctgttagtatctgttgttctttt |
401 |
Q |
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| T |
40442398 |
atgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgcttttctgttagtatctgttgttctttt |
40442486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 13063691 - 13063631
Alignment:
| Q |
314 |
tgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgc |
374 |
Q |
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| T |
13063691 |
tgagatgatagcttggcttctaattcctgaaacaccaaatgccaatgcttgagggtattgc |
13063631 |
T |
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