View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_203 (Length: 230)
Name: NF9612A_low_203
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_203 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25179180 - 25179403
Alignment:
| Q |
1 |
aataatatcatatagttaaattccatgcaaaaaattaaatagactatgtctttagatatttcaatatattacttacattattgcctctctaagataaaag |
100 |
Q |
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| T |
25179180 |
aataatatcatatagttaaattccatgcaaaaaattaaatagactatgtctttagatttttcaatatattacttacattattgcctctctaagataaaag |
25179279 |
T |
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| Q |
101 |
agatgacggtaatgataatcgattctataaatatctaaaagagattcctcaactgataatgacgagtcgtcgtactcatttatacctgcacatcatgaaa |
200 |
Q |
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| T |
25179280 |
agatgacggtaatgataatcgattctataaatatctaaaagagattcctcaactgataatgacgggtcgtcgtactcatttatacctgcacatcatgaaa |
25179379 |
T |
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| Q |
201 |
atttcaattatcatacatagtttc |
224 |
Q |
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| T |
25179380 |
atttcaattgtcatacataatttc |
25179403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 25159107 - 25159203
Alignment:
| Q |
91 |
aagataaaagagatgacggtaatgataatcgattctataaatatctaaaagagattcctcaactgataatgacgagtcgtcgtactcatttatacct |
187 |
Q |
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| T |
25159107 |
aagataaaatagatgacggtaatggtaatcaattcgaaaagtatccaagagtgattcctcaaccgataatgtagaatcctcgtattcatttatacct |
25159203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 25167558 - 25167668
Alignment:
| Q |
80 |
attgcctctctaagataaaagagatgacggtaatgataatcgattctataaatatctaaaagagattcctcaactgataatgacgagtcgtcgtactcat |
179 |
Q |
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| T |
25167558 |
attgcctcattaagatagaataaatgacgataatgataatcaactctataagtatccataagagattcctcgagcgataatgatggatcatcgtactcat |
25167657 |
T |
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| Q |
180 |
ttatacctgca |
190 |
Q |
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| T |
25167658 |
taatacctgca |
25167668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 25253782 - 25253639
Alignment:
| Q |
49 |
tctttagatatttcaatatattacttacattattgcctctctaagataaaagagatgacggtaatgataatcgattctataaatatctaaaagagattcc |
148 |
Q |
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| T |
25253782 |
tctttagatatatcaaaaaattactcacttgattgcctcattaagatagaataaatgacgataatgataatcaactctatatgtatccataagagattct |
25253683 |
T |
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| Q |
149 |
tcaactgataatgacgagtcgtcgtactcatttatacctgcaca |
192 |
Q |
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| T |
25253682 |
tcaagggataaggatggatcatcgtactcattaatacctacaca |
25253639 |
T |
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