View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_204 (Length: 230)

Name: NF9612A_low_204
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_204
NF9612A_low_204
[»] chr4 (8 HSPs)
chr4 (3-57)||(4006091-4006145)
chr4 (114-152)||(25755555-25755593)
chr4 (83-140)||(4006286-4006342)
chr4 (124-156)||(1777018-1777050)
chr4 (124-156)||(7066500-7066532)
chr4 (124-156)||(25575073-25575105)
chr4 (124-156)||(35585854-35585886)
chr4 (124-156)||(49738551-49738583)
[»] chr6 (1 HSPs)
chr6 (121-156)||(24698858-24698893)
[»] chr2 (2 HSPs)
chr2 (121-156)||(9647612-9647647)
chr2 (124-156)||(3348011-3348043)
[»] scaffold0570 (1 HSPs)
scaffold0570 (124-156)||(949-981)
[»] scaffold0036 (1 HSPs)
scaffold0036 (124-156)||(4281-4313)
[»] chr7 (3 HSPs)
chr7 (124-156)||(5418323-5418355)
chr7 (124-156)||(36869238-36869270)
chr7 (124-156)||(48919361-48919393)
[»] chr5 (1 HSPs)
chr5 (124-156)||(3563416-3563448)
[»] chr3 (3 HSPs)
chr3 (124-156)||(237297-237329)
chr3 (124-156)||(7895881-7895913)
chr3 (124-156)||(51447718-51447750)
[»] chr1 (3 HSPs)
chr1 (121-157)||(8102976-8103012)
chr1 (124-156)||(9592983-9593015)
chr1 (124-156)||(34792350-34792382)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 4006091 - 4006145
Alignment:
Q  3 ttccaaacaaggtaattgttcattgaaaagctaagtatatcgcttctcaaatata 57  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4006091 ttccaaacaaggtaattgttcattgaaaagttaagtatatcgcttctccaatata 4006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 25755555 - 25755593
Alignment:
Q  114 tgaagttgatcccatttaatgggataaggcttggttgtt 152  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25755555 tgaagtcgatcccatttaatgggataaggcttggttgtt 25755593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 4006286 - 4006342
Alignment:
Q  83 tcatgtgtttgaaccctctaagagagcattttgaagttgatcccatttaatgggataa 140  Q
    ||||||||||||||||||| |||| ||||||||||  ||| |||| ||||||||||||    
T  4006286 tcatgtgtttgaaccctctcagagggcattttgaaactgacccca-ttaatgggataa 4006342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1777050 - 1777018
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  1777050 cccacttaatgggataaggcttggttgttgttg 1777018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 7066532 - 7066500
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  7066532 cccatttagtgggataaggcttggttgttgttg 7066500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 25575073 - 25575105
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  25575073 cccatttagtgggataaggcttggttgttgttg 25575105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 35585854 - 35585886
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  35585854 cccatttagtgggataaggcttggttgttgttg 35585886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 49738583 - 49738551
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  49738583 cccatttagtgggataaggcttggttgttgttg 49738551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 24698893 - 24698858
Alignment:
Q  121 gatcccatttaatgggataaggcttggttgttgttg 156  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24698893 gatcccatttagtgggataaggcttggttgttgttg 24698858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 9647647 - 9647612
Alignment:
Q  121 gatcccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||||||||| |||||||||||||||||||||    
T  9647647 gatcccatttaatgagataaggcttggttgttgttg 9647612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 3348043 - 3348011
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    ||||||||||||||| |||||||||||||||||    
T  3348043 cccatttaatgggattaggcttggttgttgttg 3348011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 981 - 949
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  981 cccatttagtgggataaggcttggttgttgttg 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 4313 - 4281
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||||||||||||||||||||| ||||||    
T  4313 cccatttaatgggataaggcttggttcttgttg 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 5418323 - 5418355
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  5418323 cccatttagtgggataaggcttggttgttgttg 5418355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36869270 - 36869238
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  36869270 cccacttaatgggataaggcttggttgttgttg 36869238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 48919361 - 48919393
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  48919361 cccacttaatgggataaggcttggttgttgttg 48919393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 3563448 - 3563416
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  3563448 cccacttaatgggataaggcttggttgttgttg 3563416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 237329 - 237297
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  237329 cccacttaatgggataaggcttggttgttgttg 237297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 7895913 - 7895881
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  7895913 cccacttaatgggataaggcttggttgttgttg 7895881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 51447750 - 51447718
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||||||| ||||||||||||||||||||||||    
T  51447750 cccatttagtgggataaggcttggttgttgttg 51447718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 8103012 - 8102976
Alignment:
Q  121 gatcccatttaatgggataaggcttggttgttgttga 157  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  8103012 gatcccacttaatgggataaggtttggttgttgttga 8102976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 9592983 - 9593015
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  9592983 cccacttaatgggataaggcttggttgttgttg 9593015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 34792382 - 34792350
Alignment:
Q  124 cccatttaatgggataaggcttggttgttgttg 156  Q
    |||| ||||||||||||||||||||||||||||    
T  34792382 cccacttaatgggataaggcttggttgttgttg 34792350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University