View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_207 (Length: 230)
Name: NF9612A_low_207
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_207 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 2803204 - 2803404
Alignment:
| Q |
10 |
tgagatggacatcacgcttttacccaaaacgttaagacattgagtttatggggcatctcttttatagaatgttcaacctccacttctttaaataatgtga |
109 |
Q |
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| T |
2803204 |
tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga |
2803303 |
T |
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| Q |
110 |
gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggtaatttcttatttgaa |
209 |
Q |
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| T |
2803304 |
gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa |
2803403 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
2803404 |
a |
2803404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
| Q |
20 |
atcacgcttttacccaaaacgttaagacattgagtttatggggcatctcttttatagaatgttcaacctccactt |
94 |
Q |
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| T |
33561499 |
atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt |
33561573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
| Q |
10 |
tgagatggacatcacgcttttacccaaaacg--ttaagacattgagtttatggggcatctcttttatagaatgttcaacctccacttctttaaataatgt |
107 |
Q |
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| T |
10351209 |
tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt |
10351308 |
T |
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| Q |
108 |
gagacttttaacctaca |
124 |
Q |
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| T |
10351309 |
gagacttctaacttaca |
10351325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
| Q |
41 |
ttaagacattgagtttatggggcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac |
119 |
Q |
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| T |
42480611 |
ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac |
42480533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 8482027 - 8481962
Alignment:
| Q |
29 |
ttacccaaaacgttaagacattgagtttatggggcatctcttttatagaatgttcaacctccactt |
94 |
Q |
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| T |
8482027 |
ttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt |
8481962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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