View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_211 (Length: 229)
Name: NF9612A_low_211
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_211 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40093308 - 40093536
Alignment:
| Q |
1 |
tcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtctgaagaatggcaacaagactcttgatctctcc |
100 |
Q |
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| T |
40093308 |
tcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcc |
40093407 |
T |
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| Q |
101 |
tctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggtcggc |
200 |
Q |
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| T |
40093408 |
tctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggc |
40093507 |
T |
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| Q |
201 |
ctaaaaggtgaagatttaggtctctctag |
229 |
Q |
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| T |
40093508 |
ctaaaaggtgaagatttaggtctctctag |
40093536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40062656 - 40062899
Alignment:
| Q |
1 |
tcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtctgaagaatggcaacaagactcttgatctctcc |
100 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
40062656 |
tcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaacactcttgatctctcc |
40062755 |
T |
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| Q |
101 |
tctcggaagtggacatatcaggtcagtcttcactt------------ttgatcgaagactatttattagtctta---------catagttaatggagtta |
179 |
Q |
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| T |
40062756 |
tctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgattgttaatggagtta |
40062855 |
T |
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| Q |
180 |
attcttttgatacaggtcggcctaaaaggtgaagatttaggtct |
223 |
Q |
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| T |
40062856 |
attctattgatacaggttggcctaaaaggtgaagatttaggtct |
40062899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 40081005 - 40081166
Alignment:
| Q |
1 |
tcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtctgaagaatggcaacaagactcttgatctctcc |
100 |
Q |
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| T |
40081005 |
tcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcc |
40081104 |
T |
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| Q |
101 |
tctcggaagtggacatatcaggtcagtctt-cacttttgatcgaagactatttattagtctt |
161 |
Q |
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| T |
40081105 |
tctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactatttattattctt |
40081166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 40081187 - 40081255
Alignment:
| Q |
161 |
tacatagttaatggagttaattcttttgatacaggtcggcctaaaaggtgaagatttaggtctctctag |
229 |
Q |
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||||| |||||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||| ||||| |
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| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctag |
40081255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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