View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_214 (Length: 229)
Name: NF9612A_low_214
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_214 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 13270 - 13464
Alignment:
| Q |
19 |
attaattacctctgattcaatttcctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctca |
118 |
Q |
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| T |
13270 |
attaattacctctgattcaatttcctcatgaagaactgcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctca |
13369 |
T |
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| Q |
119 |
gctctacacatgatgcacctgttttaaaattcaagggacataaatagcagcaagcaacccactttactttcaaatcaagagatataaaacaccat |
213 |
Q |
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| T |
13370 |
gctctacacatgatgcacctgttttcaaatacaagggaaataaatagcagcaagaaacccactctactttcaaatcaagagatataaaacaccat |
13464 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 27336812 - 27336929
Alignment:
| Q |
25 |
tacctctgattcaatttcctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctcagctcta |
124 |
Q |
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||||||||| || || | |||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||| | |||| ||||||||| ||||| |
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| T |
27336812 |
tacctctgactctatgtgctcatgaacaacaacaaatagttgaaccccaagtgcatcaaatatgggtttcctggagaagagcttgtgtgcctctgctctg |
27336911 |
T |
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| Q |
125 |
cacatgatgcacctgttt |
142 |
Q |
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| T |
27336912 |
cacatgatgcacctgttt |
27336929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 29176959 - 29176842
Alignment:
| Q |
25 |
tacctctgattcaatttcctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctcagctcta |
124 |
Q |
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||||||||| || || | |||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||| | |||| ||||||||| ||||| |
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| T |
29176959 |
tacctctgactctatgtgctcatgaacaacaacaaatagttgaaccccaagtgcatcaaatatgggtttcctggagaagagcttgtgtgcctctgctctg |
29176860 |
T |
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| Q |
125 |
cacatgatgcacctgttt |
142 |
Q |
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| T |
29176859 |
cacatgatgcacctgttt |
29176842 |
T |
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