View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_216 (Length: 228)
Name: NF9612A_low_216
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_216 |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 1853114 - 1853159
Alignment:
| Q |
177 |
aatacagataaatattccttagaaaaatacaaataaataatacagg |
222 |
Q |
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| T |
1853114 |
aatacagataaatattccttagaaaaatacaaataaataacacagg |
1853159 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 1852780 - 1852815
Alignment:
| Q |
33 |
ccaatgttcctggatgtttacccattgaccgacgac |
68 |
Q |
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| T |
1852780 |
ccaatgttcctggatgtttacccattgaccgacgac |
1852815 |
T |
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