View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_222 (Length: 227)

Name: NF9612A_low_222
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_222
NF9612A_low_222
[»] chr7 (2 HSPs)
chr7 (7-227)||(45078347-45078567)
chr7 (143-177)||(7244800-7244834)
[»] chr8 (4 HSPs)
chr8 (143-226)||(2487925-2488008)
chr8 (146-225)||(6496811-6496890)
chr8 (139-192)||(13652320-13652373)
chr8 (139-192)||(13710963-13711016)
[»] chr2 (4 HSPs)
chr2 (143-192)||(37419584-37419633)
chr2 (145-193)||(1830142-1830190)
chr2 (144-192)||(40944017-40944065)
chr2 (157-189)||(41880359-41880391)
[»] chr3 (6 HSPs)
chr3 (151-191)||(31337337-31337377)
chr3 (145-184)||(36507011-36507050)
chr3 (151-192)||(22667507-22667548)
chr3 (151-192)||(22724146-22724187)
chr3 (146-195)||(24281148-24281197)
chr3 (139-192)||(44237521-44237574)
[»] chr6 (4 HSPs)
chr6 (145-188)||(4308885-4308928)
chr6 (145-190)||(9732572-9732617)
chr6 (152-192)||(7351597-7351637)
chr6 (145-189)||(9327139-9327183)
[»] chr1 (4 HSPs)
chr1 (147-190)||(28837274-28837317)
chr1 (152-196)||(12564425-12564469)
chr1 (171-227)||(23373258-23373314)
chr1 (144-192)||(28910091-28910139)
[»] chr4 (1 HSPs)
chr4 (161-227)||(25896853-25896919)
[»] chr5 (2 HSPs)
chr5 (151-196)||(6392580-6392625)
chr5 (134-227)||(38047787-38047880)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 45078567 - 45078347
Alignment:
Q  7 ggaacatgctcctaagatggccagtaagaatagtatcaaagcagtccatacacataccctacaaaatcaaattaaaaatgaaaacaagacaatggtcagc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45078567 ggaacatgctcctaagatggccagtaagaatagtatcaaagcagtccatacacataccctacaaaatcaaattaaaaatgaaaacaagacaatggtcagc 45078468  T
Q  107 cacatgacagtgacagcactagaacataaatgaggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtgtgacagttcaggag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45078467 cacatgacagtgacagcactagaacataaatgaggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtgtgacagttcaggag 45078368  T
Q  207 aacttatagaaataacttatg 227  Q
    |||||||||||||||||||||    
T  45078367 aacttatagaaataacttatg 45078347  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7244834 - 7244800
Alignment:
Q  143 catgttttgattggcttgtttgagtttatctactg 177  Q
    ||||||| |||||||||||||||||||||||||||    
T  7244834 catgtttggattggcttgtttgagtttatctactg 7244800  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 2487925 - 2488008
Alignment:
Q  143 catgttttgattggcttgtttgagtttatctactgatataagcacttgtgtgacagttcaggagaacttatagaaataacttat 226  Q
    ||||||| ||||||||| |||||||| ||||||||| ||||||||||||| ||| |||  |||||||||||  ||| |||||||    
T  2487925 catgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttat 2488008  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 6496811 - 6496890
Alignment:
Q  146 gttttgattggcttgtttgagtttatctactgatataagcacttgtgtgacagttcaggagaacttatagaaataactta 225  Q
    |||| ||||| |||||||||||||||||||| | |||| |||||||||||| |||  ||| | ||||| |||||| ||||    
T  6496811 gtttggattgacttgtttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttatggaaatagctta 6496890  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 13652373 - 13652320
Alignment:
Q  139 aggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||| ||||||||||| ||||| | |||||||||||| | |||||||||||||    
T  13652373 aggacctgttttgattgtcttgtctaagtttatctactcacataagcacttgtg 13652320  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 13711016 - 13710963
Alignment:
Q  139 aggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||| ||||||||||| ||||| | |||||||||||| | |||||||||||||    
T  13711016 aggacctgttttgattgtcttgtctaagtttatctactcacataagcacttgtg 13710963  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 37419584 - 37419633
Alignment:
Q  143 catgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||||| ||||| ||| |||||||||||||||| |||||||||||||||    
T  37419584 catgtttggattgacttatttgagtttatctacttatataagcacttgtg 37419633  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 1830190 - 1830142
Alignment:
Q  145 tgttttgattggcttgtttgagtttatctactgatataagcacttgtgt 193  Q
    ||||| ||||| ||| ||||||||||| |||||| ||||||||||||||    
T  1830190 tgtttggattgacttatttgagtttatttactgacataagcacttgtgt 1830142  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 40944065 - 40944017
Alignment:
Q  144 atgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    |||||| |||| |||| |||||||||||||| ||| |||||||||||||    
T  40944065 atgtttggattagcttatttgagtttatctaatgacataagcacttgtg 40944017  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 41880359 - 41880391
Alignment:
Q  157 cttgtttgagtttatctactgatataagcactt 189  Q
    |||||||||| ||||||||||||||||||||||    
T  41880359 cttgtttgagattatctactgatataagcactt 41880391  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 31337337 - 31337377
Alignment:
Q  151 gattggcttgtttgagtttatctactgatataagcacttgt 191  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  31337337 gattggtttgtttgagtttatctactgacataagcacttgt 31337377  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 36507011 - 36507050
Alignment:
Q  145 tgttttgattggcttgtttgagtttatctactgatataag 184  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  36507011 tgtttggattggcttatttgagtttatctactgatataag 36507050  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 22667548 - 22667507
Alignment:
Q  151 gattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||||||| |||||| ||||||||||| |||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtg 22667507  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 22724187 - 22724146
Alignment:
Q  151 gattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||||||| |||||| ||||||||||| |||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtg 22724146  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 24281197 - 24281148
Alignment:
Q  146 gttttgattggcttgtttgagtttatctactgatataagcacttgtgtga 195  Q
    |||| ||||| ||| ||||||| ||||||||| |||||||||||||||||    
T  24281197 gtttagattgacttatttgagtctatctactggtataagcacttgtgtga 24281148  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 44237574 - 44237521
Alignment:
Q  139 aggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    ||||| |||||  ||||| || |||||||||||||||||| |||||||||||||    
T  44237574 aggacctgtttaaattggtttatttgagtttatctactgacataagcacttgtg 44237521  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 4308928 - 4308885
Alignment:
Q  145 tgttttgattggcttgtttgagtttatctactgatataagcact 188  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagcact 4308885  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 9732617 - 9732572
Alignment:
Q  145 tgttttgattggcttgtttgagtttatctactgatataagcacttg 190  Q
    ||||| |||| |||| ||||||||||||||||| ||||||||||||    
T  9732617 tgtttggatttgcttatttgagtttatctactggtataagcacttg 9732572  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 7351597 - 7351637
Alignment:
Q  152 attggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  7351597 attgacttatttgagtttatctactgacataagcacttgtg 7351637  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 9327183 - 9327139
Alignment:
Q  145 tgttttgattggcttgtttgagtttatctactgatataagcactt 189  Q
    ||||| ||||||||  ||||||||||||||||| |||||||||||    
T  9327183 tgtttggattggctaatttgagtttatctactggtataagcactt 9327139  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 28837274 - 28837317
Alignment:
Q  147 ttttgattggcttgtttgagtttatctactgatataagcacttg 190  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||    
T  28837274 ttttgattggcttatttgagcttatctactgacataagcacttg 28837317  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12564425 - 12564469
Alignment:
Q  152 attggcttgtttgagtttatctactgatataagcacttgtgtgac 196  Q
    |||| ||| |||||| |||| ||||||||||||||||||||||||    
T  12564425 attgacttatttgagcttatatactgatataagcacttgtgtgac 12564469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 23373258 - 23373314
Alignment:
Q  171 tctactgatataagcacttgtgtgacagttcaggagaacttatagaaataacttatg 227  Q
    |||||||||||||||||||||| ||  |||  ||||| |||||||||| ||||||||    
T  23373258 tctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatg 23373314  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 28910139 - 28910091
Alignment:
Q  144 atgttttgattggcttgtttgagtttatctactgatataagcacttgtg 192  Q
    |||||| |||||  |||| |||||||||||||| |||||||||||||||    
T  28910139 atgtttagattgatttgtatgagtttatctacttatataagcacttgtg 28910091  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 25896919 - 25896853
Alignment:
Q  161 tttgagtttatctactgatataagcacttgtgtgacagttcaggagaacttatagaaataacttatg 227  Q
    ||||||||||||||||   || |||||||||| ||| ||| |||||| |||||||||||| ||||||    
T  25896919 tttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttatg 25896853  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 6392580 - 6392625
Alignment:
Q  151 gattggcttgtttgagtttatctactgatataagcacttgtgtgac 196  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||||||    
T  6392580 gattgacttatttgagtttatctactaatataagcacttttgtgac 6392625  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 38047787 - 38047880
Alignment:
Q  134 aaatgaggacatgttttgattggcttgtttgagtttatctactgatataagcacttgtgtgacagttcaggagaacttatagaaataacttatg 227  Q
    |||| ||| ||||||| |||||||||  ||||  |||||||||  |||||| ||||||||||| |||  ||||| ||||| |||| ||||||||    
T  38047787 aaataagggcatgtttagattggcttacttgaacttatctactattataagtacttgtgtgactgtttgggagagcttatggaaacaacttatg 38047880  T

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