View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_226 (Length: 226)

Name: NF9612A_low_226
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_226
NF9612A_low_226
[»] chr7 (2 HSPs)
chr7 (14-163)||(41570451-41570600)
chr7 (156-226)||(41570342-41570412)
[»] scaffold0004 (2 HSPs)
scaffold0004 (14-146)||(246980-247112)
scaffold0004 (157-215)||(246855-246913)
[»] chr4 (2 HSPs)
chr4 (35-106)||(35078322-35078393)
chr4 (34-83)||(35076014-35076063)
[»] scaffold0361 (1 HSPs)
scaffold0361 (160-218)||(8973-9031)
[»] scaffold0036 (1 HSPs)
scaffold0036 (157-215)||(98504-98562)
[»] chr8 (2 HSPs)
chr8 (157-215)||(36237095-36237153)
chr8 (160-214)||(16359535-16359589)
[»] chr3 (1 HSPs)
chr3 (157-215)||(31231340-31231398)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 41570600 - 41570451
Alignment:
Q  14 gacatcaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcatttag 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||     
T  41570600 gacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcttgtaa 41570501  T
Q  114 agcttttcaggtaaatcaattctgctagagaattttcgaccaccttcttc 163  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41570500 agcttttcaggtaaatcaattctgctagagaatttacgaccaccttcttc 41570451  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 41570342 - 41570412
Alignment:
Q  156 ccttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaacaaaacactctta 226  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41570342 ccttcttcgtttggatacgcctggacttggtaaggaagatgtgaagatctctgttgaacaaaacactctta 41570412  T

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Target: scaffold0004 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 247112 - 246980
Alignment:
Q  14 gacatcaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcatttag 113  Q
    ||||| || ||||| |||| | ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||     
T  247112 gacattaatcacatcattcctctcctcttccttcatcttaggcacaacaaccttaagcacaccgtttttcatctcagctttaatctgatcaatcttgtaa 247013  T
Q  114 agcttttcaggtaaatcaattctgctagagaat 146  Q
    ||||| ||||| |||||||||||||||||||||    
T  247012 agcttctcaggcaaatcaattctgctagagaat 246980  T

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Target: scaffold0004; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 246855 - 246913
Alignment:
Q  157 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246855 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaaca 246913  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 35078393 - 35078322
Alignment:
Q  35 ttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaat 106  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35078393 ttcctctttcttaatttttggcacaataaccttaagcacaccatttttcaactcagctttaatctgatcaat 35078322  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 35076063 - 35076014
Alignment:
Q  34 tttcctctttcttcattttaggtacaataaccttaagcacaccatttttc 83  Q
    ||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  35076063 tttcctcttccttaattttaggtacagtaaccttaagcacaccatttttc 35076014  T

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Target: scaffold0361 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 9031 - 8973
Alignment:
Q  160 cttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaacaaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9031 cttcgtttggatatgcctggacttggtaaggaagatgtgaagttctctgttgaacaaaa 8973  T

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Target: scaffold0036 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 98504 - 98562
Alignment:
Q  157 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  98504 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaacatatctgttgaaca 98562  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 36237153 - 36237095
Alignment:
Q  157 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  36237153 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaacatatctgttgaaca 36237095  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 16359535 - 16359589
Alignment:
Q  160 cttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaac 214  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16359535 cttcgtttggatatgactggacttggtatggaagatgtgaagatctctgttgaac 16359589  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 31231340 - 31231398
Alignment:
Q  157 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaagatctctgttgaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  31231340 cttcttcgtttggatatgcctggacttggtaaggaagatgtgaacatatctgttgaaca 31231398  T

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