View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_227 (Length: 226)
Name: NF9612A_low_227
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_227 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 41570600 - 41570388
Alignment:
| Q |
14 |
gacatcaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcatttag |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
41570600 |
gacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcttgtaa |
41570501 |
T |
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| Q |
114 |
agcttttcaggtaaatcaattctgctagagaatttacgaccaccttcttcaacttcctcactttccttagcaccttctcctttaatggtaagagtgtttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41570500 |
agcttttcaggtaaatcaattctgctagagaatttacgaccaccttcttcaacttcctcactttccttagcaccttctcctttaatggtaagagtgtttt |
41570401 |
T |
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| Q |
214 |
gttcaacagagat |
226 |
Q |
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||||||||||||| |
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| T |
41570400 |
gttcaacagagat |
41570388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 247112 - 246900
Alignment:
| Q |
14 |
gacatcaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcatttag |
113 |
Q |
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||||| || ||||| |||| | ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
247112 |
gacattaatcacatcattcctctcctcttccttcatcttaggcacaacaaccttaagcacaccgtttttcatctcagctttaatctgatcaatcttgtaa |
247013 |
T |
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| Q |
114 |
agcttttcaggtaaatcaattctgctagagaatttacgaccaccttcttcaacttcctcactttccttagcaccttctcctttaatggtaagagtgtttt |
213 |
Q |
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| T |
247012 |
agcttctcaggcaaatcaattctgctagagaatcgacgtgcaccttcttcatcttcctcactttctttagcaccttcacctttaatagtaagggtattct |
246913 |
T |
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| Q |
214 |
gttcaacagagat |
226 |
Q |
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| T |
246912 |
gttcaacagagat |
246900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 35078393 - 35078322
Alignment:
| Q |
35 |
ttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaat |
106 |
Q |
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|||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35078393 |
ttcctctttcttaatttttggcacaataaccttaagcacaccatttttcaactcagctttaatctgatcaat |
35078322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 35076063 - 35076014
Alignment:
| Q |
34 |
tttcctctttcttcattttaggtacaataaccttaagcacaccatttttc |
83 |
Q |
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||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
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| T |
35076063 |
tttcctcttccttaattttaggtacagtaaccttaagcacaccatttttc |
35076014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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