View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_230 (Length: 224)
Name: NF9612A_low_230
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_230 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 40456640 - 40456787
Alignment:
| Q |
57 |
aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatgtacagaaataaccagcaaagagatggaattctgaccctaagat |
156 |
Q |
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| T |
40456640 |
aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatatacagaaataaccagcaaagagatggaattctgaccctaagat |
40456739 |
T |
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| Q |
157 |
tccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat |
204 |
Q |
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| T |
40456740 |
tccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat |
40456787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 40482086 - 40482148
Alignment:
| Q |
57 |
aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatgtacaga |
119 |
Q |
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| T |
40482086 |
aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatatacaga |
40482148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 40363005 - 40362953
Alignment:
| Q |
152 |
aagattccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat |
204 |
Q |
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| T |
40363005 |
aagatttcttctagttatcatttgtgcaaggactaattggtatcacatttgat |
40362953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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