View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_234 (Length: 221)
Name: NF9612A_low_234
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_234 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 47719968 - 47719783
Alignment:
| Q |
16 |
ataaacaacatcatcataggtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaata |
115 |
Q |
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| T |
47719968 |
ataaacaacatcatcataggtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaata |
47719869 |
T |
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| Q |
116 |
atcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataacacaattattcgtctaaggtgcat |
201 |
Q |
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| T |
47719868 |
atcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtctaaggtgcat |
47719783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 47726960 - 47726786
Alignment:
| Q |
16 |
ataaacaacatcatcataggtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaata |
115 |
Q |
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| T |
47726960 |
ataaacaacatcatcataggtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaata |
47726861 |
T |
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| Q |
116 |
atcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataacacaattattcgt |
190 |
Q |
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| T |
47726860 |
atcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgt |
47726786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 47748219 - 47748092
Alignment:
| Q |
63 |
aaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaata |
162 |
Q |
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| T |
47748219 |
aacccctaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaata |
47748120 |
T |
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| Q |
163 |
tcaaaaataaaataacacaattattcgt |
190 |
Q |
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| T |
47748119 |
tcaaaaataaaataactcaattattcgt |
47748092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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