View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_239 (Length: 218)
Name: NF9612A_low_239
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_239 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 30810500 - 30810322
Alignment:
| Q |
26 |
attatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataagtaaataaatgttga--agagtttttatagtgtaaaagaaattt |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30810500 |
attatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagtaaataaatgttgaatagagtttttatagtgtaaaagaaattt |
30810401 |
T |
|
| Q |
124 |
gaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacatttaatgtgaggggagattgtg |
200 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30810400 |
gaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacatttaatgtgaggggagattgtg |
30810322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30820180 - 30820124
Alignment:
| Q |
26 |
attatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
82 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||| |||||||||| | ||||||| |
|
|
| T |
30820180 |
attatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University