View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_241 (Length: 217)

Name: NF9612A_low_241
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_241
NF9612A_low_241
[»] chr2 (1 HSPs)
chr2 (3-200)||(38483684-38483881)
[»] chr4 (2 HSPs)
chr4 (29-123)||(30118163-30118257)
chr4 (136-200)||(30118074-30118138)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 38483881 - 38483684
Alignment:
Q  3 atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38483881 atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca 38483782  T
Q  103 acaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38483781 acaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata 38483684  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 30118257 - 30118163
Alignment:
Q  29 cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca 123  Q
    ||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| ||||||    
T  30118257 cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca 30118163  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 30118138 - 30118074
Alignment:
Q  136 aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata 200  Q
    |||||| ||||||| | ||||  |||||||||||  ||||||||||||||| |||||||||||||    
T  30118138 aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaata 30118074  T

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