View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_242 (Length: 217)

Name: NF9612A_low_242

Description: NF9612A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9612A_low_242

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 142; E-Value: 1e-74

Query Start/End: Original strand, 19 - 205

Target Start/End: Complemental strand, 31998088 - 31997902

Alignment:

Q	19	aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31998088	aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta	31997989	T

Q	119	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatatttttgga	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	31997988	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttcttgga	31997902	T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 111 - 193

Target Start/End: Complemental strand, 15843120 - 15843038

Alignment:

Q	111	agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgagg	193	Q
		\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15843120	agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgagg	15843038	T

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