View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_244 (Length: 215)
Name: NF9612A_low_244
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_244 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35743104 - 35742890
Alignment:
| Q |
1 |
ttgactcttctgatatttcttgtgttgcatcggtattttgaagtcatatcgtaatatttacacttctgcttgcttgaatttgtagttcacttatgactct |
100 |
Q |
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| T |
35743104 |
ttgactcttctgatatttcttgtgttgcatcagtattttgaagtcagatcgtaatatttacacttctgcttgcttgaatttgtagttcacttatgactct |
35743005 |
T |
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| Q |
101 |
ttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggact |
200 |
Q |
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| T |
35743004 |
ttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggact |
35742905 |
T |
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| Q |
201 |
agtattttgtctaaa |
215 |
Q |
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| T |
35742904 |
agtattttgtctaaa |
35742890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 35749425 - 35749256
Alignment:
| Q |
51 |
gtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaagagg----------atcaaattgatcgaatcagtgactta |
140 |
Q |
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| T |
35749425 |
gtaatatttacacttgtgcttgcttgaatttgtagttaccttatgactctgtctaa-caagaaggccaatcatgatcacattgatcgaatcagtgactta |
35749327 |
T |
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| Q |
141 |
ccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtc |
211 |
Q |
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| T |
35749326 |
ccatgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtc |
35749256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 35739741 - 35739703
Alignment:
| Q |
128 |
aatcagtgacttaccatgcaatgtcattgacggcatcct |
166 |
Q |
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| T |
35739741 |
aatcagtgacttaccatgcaatgccattgacggcatcct |
35739703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 3733 - 3681
Alignment:
| Q |
114 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
166 |
Q |
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| T |
3733 |
gatcacattgatcgaatcagtgacttaccatgtaatgtcattgatggcatcct |
3681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 40011283 - 40011231
Alignment:
| Q |
114 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
166 |
Q |
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| T |
40011283 |
gatcacattgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcct |
40011231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 10862282 - 10862327
Alignment:
| Q |
121 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
166 |
Q |
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| T |
10862282 |
ttgattgaattagtgacttaccatgtaatgtcattgatggcatcct |
10862327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 16865281 - 16865311
Alignment:
| Q |
70 |
ttgcttgaatttgtagttcacttatgactct |
100 |
Q |
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| T |
16865281 |
ttgcttgaatttgtagttcacttatgactct |
16865311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 16865344 - 16865386
Alignment:
| Q |
121 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcat |
163 |
Q |
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| T |
16865344 |
ttgatcgaatcagtgacttaccaagtaatgtcattgatggcat |
16865386 |
T |
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