View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_25 (Length: 384)
Name: NF9612A_low_25
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 30300402 - 30300359
Alignment:
| Q |
340 |
gaaaagaaaagctgttcatatagtagcatagatgagtattatga |
383 |
Q |
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| T |
30300402 |
gaaaagaaaagctgttcatatagtagcatagatgagtattatga |
30300359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 30316065 - 30316023
Alignment:
| Q |
342 |
aaagaaaagctgttcatatagtagcatagatgagtattatgag |
384 |
Q |
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| T |
30316065 |
aaagaaaagctgttcatatagtagcatagatgagtattatgag |
30316023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 30305207 - 30305166
Alignment:
| Q |
340 |
gaaaagaaaagctgttcatatagtagcatagatgagtattat |
381 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||| |
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| T |
30305207 |
gaaaagaaaagcggttcatatagtagcatagatgactattat |
30305166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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