View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_250 (Length: 209)
Name: NF9612A_low_250
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_250 |
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| [»] chr4 (13 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 27508497 - 27508320
Alignment:
| Q |
32 |
aatgagatggacatcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccataga |
131 |
Q |
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||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27508497 |
aatgagatgtccttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataaggccataga |
27508398 |
T |
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| Q |
132 |
taacaatagatcaacagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508397 |
taacaatagatcaacagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttct |
27508320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 27468901 - 27469062
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatca |
144 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27468901 |
tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtaagtgactataaggccatggataacaatagatca |
27469000 |
T |
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| Q |
145 |
acagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttct |
206 |
Q |
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|| |||||||||||||||| ||||||||||||| |||||||||| || ||||||||||||| |
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| T |
27469001 |
actcaaaccattctacatgtctgtggttctactttcaagtctatctatcatatgatgcttct |
27469062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 27514469 - 27514310
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatca |
144 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | || |
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| T |
27514469 |
tcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagctagtaagtgactataatgccatagataacaatataaca |
27514370 |
T |
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| Q |
145 |
acagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgctt |
204 |
Q |
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||| ||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||| |
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| T |
27514369 |
acataaaccattctatatgtttgtggctttactttcaagtctatcaattatatgatgctt |
27514310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 27476133 - 27476292
Alignment:
| Q |
47 |
ataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaac |
146 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| |||||| ||||| ||| ||||||||||||||||| |
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| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggacatggataacaatagatcaac |
27476232 |
T |
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| Q |
147 |
agaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttct |
206 |
Q |
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| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
27476233 |
ataaaccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttct |
27476292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 27524100 - 27523940
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatca |
144 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| || ||||||||| ||||| |
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| T |
27524100 |
tcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtgtctacatggctatggataacaattgatca |
27524001 |
T |
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| Q |
145 |
acagaaaccattctacatgtttgtgg-ttctacttacaagtctatcaattatatgatgctt |
204 |
Q |
| |
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||| |||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||| |
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| T |
27524000 |
acataaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgatgctt |
27523940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 27489684 - 27489526
Alignment:
| Q |
48 |
taattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaaca |
147 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| || |||| || ||||| || |
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| T |
27489684 |
taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataaggcaatgtataattatggatcatca |
27489585 |
T |
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| Q |
148 |
gaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttct |
206 |
Q |
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| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
27489584 |
taggccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttct |
27489526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 27556962 - 27557082
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatca |
144 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||||| ||||| || || ||||||||||||||| |
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| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtgattataacgcaatggataacaatagatca |
27557061 |
T |
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| Q |
145 |
acagaaaccattctacatgtt |
165 |
Q |
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||| ||||||||||||||||| |
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| T |
27557062 |
acataaaccattctacatgtt |
27557082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 27503499 - 27503399
Alignment:
| Q |
47 |
ataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaac |
146 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| |
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| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtccagctgataagtgactataaggcaatggataacaatagatcaac |
27503400 |
T |
|
| Q |
147 |
a |
147 |
Q |
| |
|
| |
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| T |
27503399 |
a |
27503399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 27497858 - 27497975
Alignment:
| Q |
52 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtga-ctataaggccatagataacaatagatcaacagaa |
150 |
Q |
| |
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|||||||||| ||| | ||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||| | |||||||||||||||||| || |
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| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtgagatataaggcagtggataacaatagatcaacataa |
27497957 |
T |
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| Q |
151 |
accattctacatgtttgt |
168 |
Q |
| |
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|||||||||||||||||| |
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| T |
27497958 |
accattctacatgtttgt |
27497975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 27506322 - 27506260
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagct |
107 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||| | | ||||||||||||||| |
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| T |
27506322 |
tcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtccagct |
27506260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 27479402 - 27479464
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagct |
107 |
Q |
| |
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|||||||| |||||||||| | |||||||||||||||||||| | ||||||||||||||| |
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| T |
27479402 |
tcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct |
27479464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 27517243 - 27517168
Alignment:
| Q |
121 |
aaggccatagataacaatagatcaacagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatg |
198 |
Q |
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||||| ||||||| ||||||||| || |||||| ||||||||||||||||| ||||| ||||| || ||||||||| |
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| T |
27517243 |
aaggcaatagatagcaatagatc--cataaaccactctacatgtttgtggttatactttcaagttgattaattatatg |
27517168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 27554106 - 27554174
Alignment:
| Q |
45 |
tcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagt |
114 |
Q |
| |
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||||||||||| ||||||| ||||||||||| ||||||| ||| |||| |||| |||||||||||||| |
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| T |
27554106 |
tcataattttgcaaacatgtctaagacatgttt-cttcattttgataatgttgatctccagctggtaagt |
27554174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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