View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_253 (Length: 207)

Name: NF9612A_low_253
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_253
NF9612A_low_253
[»] chr2 (18 HSPs)
chr2 (20-186)||(44624832-44624998)
chr2 (20-166)||(44615459-44615605)
chr2 (25-153)||(39472763-39472891)
chr2 (22-177)||(39153111-39153266)
chr2 (22-177)||(39387469-39387624)
chr2 (22-153)||(39138698-39138826)
chr2 (22-177)||(39216709-39216864)
chr2 (20-150)||(39371167-39371297)
chr2 (22-177)||(39396627-39396782)
chr2 (23-152)||(39205742-39205871)
chr2 (22-177)||(39196485-39196640)
chr2 (22-177)||(39413004-39413159)
chr2 (23-145)||(44895114-44895236)
chr2 (22-150)||(39380496-39380624)
chr2 (26-152)||(39478294-39478420)
chr2 (22-177)||(39421161-39421313)
chr2 (23-152)||(39223764-39223893)
chr2 (49-168)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (20-153)||(44730165-44730298)
chr8 (20-178)||(44949869-44950027)
chr8 (22-175)||(45343017-45343170)
[»] chr5 (2 HSPs)
chr5 (22-178)||(17060698-17060854)
chr5 (22-177)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (20-178)||(5849-6007)
[»] chr7 (1 HSPs)
chr7 (26-153)||(19808959-19809083)
[»] chr6 (1 HSPs)
chr6 (23-80)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 44624832 - 44624998
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44624832 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgattta 44624931  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 186  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624932 tggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 44615459 - 44615605
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  44615459 atgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgattta 44615558  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttg 166  Q
     ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615559 cggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 39472891 - 39472763
Alignment:
Q  25 gcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggat 124  Q
    ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| ||    
T  39472891 gcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaat 39472792  T
Q  125 tgcatacttattttgatgaagatgaagtc 153  Q
    ||| ||||| |||||||||||||||||||    
T  39472791 tgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39153111 - 39153266
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || |||||||||||||||    
T  39153111 gaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatg 39153210  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153211 gattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39387624 - 39387469
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||||    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 39138698 - 39138826
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  ||||||    
T  39138698 gaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatg 39138794  T
Q  122 gattgcatacttattttgatgaagatgaagtc 153  Q
     ||||| |||||||||||||||||||||||||    
T  39138795 aattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39216709 - 39216864
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| |||||||    
T  39216709 gaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatg 39216808  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216809 gattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 39371167 - 39371297
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| | |||    
T  39371167 atgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaatta 39371266  T
Q  120 tggattgcatacttattttgatgaagatgaa 150  Q
    |||||||  ||||| ||||||||||||||||    
T  39371267 tggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39396782 - 39396627
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| |||||||    
T  39396782 gaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatg 39396683  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396682 gattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 39205871 - 39205742
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||      
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  123 attgcatacttattttgatgaagatgaagt 152  Q
    ||||| |  || ||||||| ||||||||||    
T  39205771 attgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39196640 - 39196485
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||||||     
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39413159 - 39413004
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  ||| ||    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 44895236 - 44895114
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||    
T  44895236 aagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatgg 44895137  T
Q  123 attgcatacttattttgatgaag 145  Q
    ||||  ||||| ||| |||||||    
T  44895136 attgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 39380624 - 39380496
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| |||||||    
T  39380624 gaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatg 39380525  T
Q  122 gattgcatacttattttgatgaagatgaa 150  Q
    |||||| ||||| ||| ||||||||||||    
T  39380524 gattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  26 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 125  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  126 gcatacttattttgatgaagatgaagt 152  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39421313 - 39421161
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||||      
T  39421313 gaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatttacc 39421217  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
     ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421216 aattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||      
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  123 attgcatacttattttgatgaagatgaagt 152  Q
    ||||| |  ||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  49 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 148  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  149 aagtcataaagctttttgga 168  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 44730165 - 44730298
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44730165 atgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgattta 44730264  T
Q  120 tggattgcatacttattttgatgaagatgaagtc 153  Q
    | |||||| |||||| ||||||| ||||||||||    
T  44730265 tagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 44950027 - 44949869
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||||||    
T  44950027 atgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgattta 44949928  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949927 tggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 45343017 - 45343170
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||| |||    
T  45343017 gaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatg 45343116  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 175  Q
     ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343117 tattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 33562341 - 33562496
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||||||     
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

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Target: scaffold0283 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 6007 - 5849
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||||||    
T  6007 atgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgattta 5908  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5907 tggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 19808959 - 19809083
Alignment:
Q  26 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 125  Q
    ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |||||| |||    
T  19808959 cattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaatt 19809055  T
Q  126 gcatacttattttgatgaagatgaagtc 153  Q
    || |||||||||||||||||||||||||    
T  19809056 gcttacttattttgatgaagatgaagtc 19809083  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 16114420 - 16114477
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 80  Q
    ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114420 aagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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