View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_255 (Length: 204)
Name: NF9612A_low_255
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_255 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 36125355 - 36125516
Alignment:
| Q |
24 |
tatggtgttgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaagg |
123 |
Q |
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| T |
36125355 |
tatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaagg |
36125454 |
T |
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| Q |
124 |
ttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
185 |
Q |
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| T |
36125455 |
ttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
36125516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 42509247 - 42509377
Alignment:
| Q |
52 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
151 |
Q |
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| T |
42509247 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
42509346 |
T |
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| Q |
152 |
ttgcattctattatggaaaagatgagaagct |
182 |
Q |
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| T |
42509347 |
ttgcttactattatagaaaagaagagaagct |
42509377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 1254944 - 1255047
Alignment:
| Q |
58 |
agatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcat |
157 |
Q |
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| T |
1254944 |
agatttaggcacatgaataatgttggtaaacaagagttttttgaacacatgaaaaagcttggaagtttgacacatcctaatctacttcctcttattgcat |
1255043 |
T |
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| Q |
158 |
tcta |
161 |
Q |
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|||| |
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| T |
1255044 |
tcta |
1255047 |
T |
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