View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_31 (Length: 370)
Name: NF9612A_low_31
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 32472721 - 32473071
Alignment:
| Q |
15 |
aaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatctacgaaaacgagtttggattcgcagtgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32472721 |
aaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatccacgaaaacgagtttggattcgcagtgg |
32472820 |
T |
|
| Q |
115 |
aggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaagggaacggcgaagtggagttcatacatggcgg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32472821 |
aggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaaggggacggcgaagtggagttcatacatggcgg |
32472920 |
T |
|
| Q |
215 |
ggatgttgggagcgatgacggagacgacgttgccgcggcggattcctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgagacca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32472921 |
ggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgagacca |
32473020 |
T |
|
| Q |
315 |
tgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32473021 |
tgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
32473071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University