View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_32 (Length: 369)
Name: NF9612A_low_32
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 187 - 348
Target Start/End: Complemental strand, 3586866 - 3586705
Alignment:
| Q |
187 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
286 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
3586866 |
tacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
3586767 |
T |
|
| Q |
287 |
gcggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcc |
348 |
Q |
| |
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|||| | ||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
3586766 |
gcgggaaagttaagataaacatgtagaaaatgcgggaacagttaagaagaataagcatgtcc |
3586705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 187 - 337
Target Start/End: Original strand, 9789599 - 9789750
Alignment:
| Q |
187 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
286 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
9789599 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaagatatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
9789698 |
T |
|
| Q |
287 |
gc-ggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaa |
337 |
Q |
| |
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|| |||| | |||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
9789699 |
gcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagaa |
9789750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 3587039 - 3586918
Alignment:
| Q |
12 |
atgaataaaggaacatgcaacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagtacatagaat |
111 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
3587039 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaac--aaaaaaagaaaacaaaagtgcatagaat |
3586942 |
T |
|
| Q |
112 |
actgatttgataacatgattcaac |
135 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
3586941 |
actgatttgataacatgattcaac |
3586918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 9789426 - 9789547
Alignment:
| Q |
12 |
atgaataaaggaacatgcaacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagtacatagaat |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
9789426 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaac--aaaaaaagaaaacagaagtgcatagaat |
9789523 |
T |
|
| Q |
112 |
actgatttgataacatgattcaac |
135 |
Q |
| |
|
| | |||||||||||||||||||| |
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|
| T |
9789524 |
attaatttgataacatgattcaac |
9789547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 44504713 - 44504580
Alignment:
| Q |
194 |
agatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgc-ggaa |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||| |
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| T |
44504713 |
agatctgaaaagtctgacaacagcagcagctaagttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaa |
44504614 |
T |
|
| Q |
293 |
tagttaagataagcatgtagaaaatgcaggaaca |
326 |
Q |
| |
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|||| |||||| |||||||||||||| |||||| |
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|
| T |
44504613 |
cagttgagataaacatgtagaaaatgcgggaaca |
44504580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 44504887 - 44504766
Alignment:
| Q |
12 |
atgaataaaggaacatgcaacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagtacatagaat |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||| |||||| ||||| |||||||| |
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|
| T |
44504887 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggttttaattgaataacaaac--aaaaaaagaaaaccgaagtgcatagaat |
44504790 |
T |
|
| Q |
112 |
actgatttgataacatgattcaac |
135 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
44504789 |
accgatttgataacatgattcaac |
44504766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 10014212 - 10014333
Alignment:
| Q |
12 |
atgaataaaggaacatgcaacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagtacatagaat |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10014212 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaac--aaaaaaagaaaacagaagtacatagaat |
10014309 |
T |
|
| Q |
112 |
actgatttgataacatgattcaac |
135 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
10014310 |
actgatttgataacatgattcaac |
10014333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 10021353 - 10021474
Alignment:
| Q |
12 |
atgaataaaggaacatgcaacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagtacatagaat |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
10021353 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaac--aaaaaaagaaaacagaagtacatagaat |
10021450 |
T |
|
| Q |
112 |
actgatttgataacatgattcaac |
135 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
10021451 |
actgatttgataacatgattcaac |
10021474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 31678598 - 31678513
Alignment:
| Q |
187 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctata |
272 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
31678598 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatatatata |
31678513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 31678427 - 31678375
Alignment:
| Q |
296 |
ttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcc |
348 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
31678427 |
ttaagataagcatgtagaaaatgcgggaacagttaagaagcataagcatgtcc |
31678375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 31678753 - 31678650
Alignment:
| Q |
29 |
caacttacaatcacaaaaacataaaaaagtatggtattgattgaataacaaacnnnnnnnnngaaaacagaagt--acatagaatactgatttgataaca |
126 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
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|
| T |
31678753 |
caacttgcaatcacaaaagcataaaaa-gtatggtattgattgaataacaaa----aaaaaaaaaaacagaagtgcatatagaatactgatttgataaca |
31678659 |
T |
|
| Q |
127 |
tgattcaac |
135 |
Q |
| |
|
||||||||| |
|
|
| T |
31678658 |
tgattcaac |
31678650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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