View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_33 (Length: 368)

Name: NF9612A_low_33
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_33
NF9612A_low_33
[»] chr2 (3 HSPs)
chr2 (21-367)||(37561766-37562104)
chr2 (251-303)||(28028958-28029010)
chr2 (283-323)||(29968937-29968977)
[»] chr4 (5 HSPs)
chr4 (259-323)||(27045573-27045636)
chr4 (253-304)||(17897795-17897845)
chr4 (250-291)||(3652752-3652792)
chr4 (282-323)||(37500207-37500248)
chr4 (283-323)||(2206263-2206303)
[»] chr5 (1 HSPs)
chr5 (276-322)||(2937858-2937904)
[»] chr1 (2 HSPs)
chr1 (252-302)||(5167381-5167430)
chr1 (259-311)||(39289188-39289239)
[»] chr6 (2 HSPs)
chr6 (282-323)||(2234146-2234187)
chr6 (257-293)||(10564812-10564848)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 37562104 - 37561766
Alignment:
Q  21 atcaaattcattgatatcattattcctctttatcatttctttcctacaatgtttccatacctgctctgcctgtatcaaccgtttgaatggatgaatttaa 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37562104 atcaaattcattgatatcatgattcctctttatcatttctttcctacaatgtttccatacctgctctgcctgtatcaacggtttgaatggatgaatttaa 37562005  T
Q  121 tcatacaaccaaataactacaaaactgatatcattggactagttcaacttgttctttaactaagtgcatgtttgaaatcatgccgagtttgacaaaatca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37562004 tcatacaaccaaataactacaaaactgatatcattggactagttcaacttgttctttaactaagtgcatgtttgaaatcatgccgagtttgacaaaatca 37561905  T
Q  221 cgatggtgttgtgatttgtagaagttacaaagtgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561904 cgatggtgttgtgatttgtagaagttacaaagtgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttg 37561805  T
Q  321 aattatgattggatacattcacataacaaaagttgaacaatagattt 367  Q
            |||||||||||||||||||||||||||||||||||||||    
T  37561804 --------ttggatacattcacataacaaaagttgaacaatagattt 37561766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 28029010 - 28028958
Alignment:
Q  251 agtgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgattt 303  Q
    ||||||||||||||| |||||||||||||| ||||||||  ||| ||||||||    
T  28029010 agtgtttgtttggttttgcggtgataaaaaattgattttatatgcattgattt 28028958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 29968937 - 29968977
Alignment:
Q  283 tgattttgaatgtattgattttagttaaatgtgagttgaat 323  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  29968937 tgattttgaatgaattgattttagttaaaagtgagttgaat 29968977  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 27045636 - 27045573
Alignment:
Q  259 tttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttgaat 323  Q
    ||||||| | |||||||||||| || |||||||||| |||||||||||||||| || ||||||||    
T  27045636 tttggttttacggtgataaaaaatt-attttgaatgaattgattttagttaaaagtaagttgaat 27045573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 17897795 - 17897845
Alignment:
Q  253 tgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgatttt 304  Q
    |||||||||||||||||||||| ||||| |||||||||| || |||||||||    
T  17897795 tgtttgtttggttctgcggtgacaaaaa-ttgattttgagtgaattgatttt 17897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 3652792 - 3652752
Alignment:
Q  250 aagtgtttgtttggttctgcggtgataaaaacttgattttga 291  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  3652792 aagtgtgtgtttggttctgcggtgataaaaa-ttgattttga 3652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 37500207 - 37500248
Alignment:
Q  282 ttgattttgaatgtattgattttagttaaatgtgagttgaat 323  Q
    ||||||||||||| ||||||||||||||||  ||||||||||    
T  37500207 ttgattttgaatgaattgattttagttaaaattgagttgaat 37500248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 2206303 - 2206263
Alignment:
Q  283 tgattttgaatgtattgattttagttaaatgtgagttgaat 323  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  2206303 tgattttgaatgaattgattttatttaaaagtgagttgaat 2206263  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 2937858 - 2937904
Alignment:
Q  276 aaaaacttgattttgaatgtattgattttagttaaatgtgagttgaa 322  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||||    
T  2937858 aaaaaattgattttgaatgaattgattttagctaaaggtgagttgaa 2937904  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 5167430 - 5167381
Alignment:
Q  252 gtgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgatt 302  Q
    |||| ||||||||||||||||||| |||| ||||||||||||| |||||||    
T  5167430 gtgtgtgtttggttctgcggtgatgaaaa-ttgattttgaatgaattgatt 5167381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 39289188 - 39289239
Alignment:
Q  259 tttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaa 311  Q
    ||||||||||| |||||||||| ||||||||||||  |||||||||| |||||    
T  39289188 tttggttctgctgtgataaaaa-ttgattttgaatcaattgattttacttaaa 39289239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 2234146 - 2234187
Alignment:
Q  282 ttgattttgaatgtattgattttagttaaatgtgagttgaat 323  Q
    ||||||||||||| |||||||||| ||||| |||||||||||    
T  2234146 ttgattttgaatgaattgattttacttaaaagtgagttgaat 2234187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 10564812 - 10564848
Alignment:
Q  257 tgtttggttctgcggtgataaaaacttgattttgaat 293  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  10564812 tgtttggttctgcggtgacaaaaaattgattttgaat 10564848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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