View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_35 (Length: 364)
Name: NF9612A_low_35
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 149 - 344
Target Start/End: Complemental strand, 23786540 - 23786345
Alignment:
| Q |
149 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgacacgcggtctagccatggga |
248 |
Q |
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| T |
23786540 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgatacgcggtctagccatggga |
23786441 |
T |
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| Q |
249 |
gttggatataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaagaaacagcagcagcaccagca |
344 |
Q |
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| T |
23786440 |
gttggatataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaacaaacagcagcagcagcagca |
23786345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23786720 - 23786572
Alignment:
| Q |
1 |
gttacctcttagagagtgacactggatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcaaatttggataattcatcatttaat |
100 |
Q |
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| T |
23786720 |
gttacctcttagagagtgacactggatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcgaatttggataattcatcatctaat |
23786621 |
T |
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| Q |
101 |
tctttgac-aggttaaaaatagtgtcgaaagagtgcattttagcaagtt |
148 |
Q |
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| T |
23786620 |
tctttgacaaggataaaaatagtgtcgaaagagtgcattttagcaagtt |
23786572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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