View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_36 (Length: 362)
Name: NF9612A_low_36
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 54044452 - 54044806
Alignment:
| Q |
8 |
gagatgaagtatgtcgtgctaaagctaaatacagtcagtccaattcaccttcttatatttatctatatgcatatggtttcaacttaaatacgtatcttct |
107 |
Q |
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| T |
54044452 |
gagaagaagtatgtcgtgctaaagctaaatacagccagtccaattcaccttcttatattcatctatatgcatatggtttcaacttaaatacgtatcttct |
54044551 |
T |
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| Q |
108 |
ttatctatattagattgacgttttcattcattaaatcaaacatatagatattatgttaagaatatctatattatatgat----atgatgttttatctctc |
203 |
Q |
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| T |
54044552 |
ttatctatattagattgacgttttcattcattaaatcaaacatatagatattatgttaagaatatctatattatatgatattaattatgttttatctctc |
54044651 |
T |
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| Q |
204 |
atgccatcgtcttcttttattaaagaatgccatcgtcttcttcttgnnnnnnncttgaaatctttcccacgtaaatgagagg-ttgcgagtttaaatacg |
302 |
Q |
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| T |
54044652 |
atgtcatcgtcttcttttgttaaagaatgccatcgtcttcttcttgtttttttcttgaaatctttcccacgtaaatgagaggtttgcgagtttaaatacg |
54044751 |
T |
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| Q |
303 |
gtcagcaacaaaatgttaagaataataattcnnnnnnnatggaaaggataatagt |
357 |
Q |
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| T |
54044752 |
gtcaacaacaaaatgttaagaataataattctttttttatggaaaggataatagt |
54044806 |
T |
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