View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_44 (Length: 357)
Name: NF9612A_low_44
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 45691938 - 45691602
Alignment:
| Q |
16 |
attaacagaaaataacacagtatataaaccagcaagtatgctaatgctatgcatcgcaacggtgagaaagaaagcatgttactaaatcacgggaacttgt |
115 |
Q |
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| T |
45691938 |
attaacagaaaataacacagtatagaaaccagcaagtatgctaatgctatgcatcgcaacggtgagaaagaaagcatgttactaaatcacgggaacttgt |
45691839 |
T |
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| Q |
116 |
taagtctatcatcatattactcattacttgattttaatatcgtctgtctttcgcttgtgatataatgtaatttgtttgcttttgtgttgccttcattgag |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691838 |
taagtctatcat---attactcattacttgattttaatatcgtctgtctttcgcttgtgatataatgtaatttgtttgcttttgtgttgccttcattgag |
45691742 |
T |
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| Q |
216 |
gtttccttaggaaggccctttgatgtttttgttgaatcactttcctcttcatgctgagctgtatcaattaactaactagtagtagcttggaatacaagca |
315 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691741 |
gtttccttaggaaggtcctttgatttttttgttgaatcactttcctcttcatgctgagctgtatcaattaactaactagtagtagcttggaatacaagca |
45691642 |
T |
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| Q |
316 |
atctaagtaaccatgatttagtttggtgttgagctgtatc |
355 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
45691641 |
atctaagtaaccatgatttagtttgatgttgagctgtatc |
45691602 |
T |
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