View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_46 (Length: 355)
Name: NF9612A_low_46
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_46 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 165 - 355
Target Start/End: Complemental strand, 21228846 - 21228656
Alignment:
| Q |
165 |
aatagcgcaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
264 |
Q |
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| T |
21228846 |
aatagcacaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccat |
21228747 |
T |
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| Q |
265 |
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttga |
355 |
Q |
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| T |
21228746 |
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttga |
21228656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 7884074 - 7884190
Alignment:
| Q |
52 |
acttacattttcatcacgactagaaacaatgccattgacatctgcctcatgtcagtgcttcgtctttccgtcaattggttcatcatataca----aaatt |
147 |
Q |
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| T |
7884074 |
acttacattttcatcaccactagacacaatgccattctcatctggctcatggcagtggttcgtcttttcctcaattggttcatcatagacaagataaatt |
7884173 |
T |
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| Q |
148 |
gttgtcttcttcacaat |
164 |
Q |
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| T |
7884174 |
gttgttttcttcacaat |
7884190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 10035991 - 10035872
Alignment:
| Q |
48 |
tattacttacattttcatcacgactagaaacaatgccattgacatct-gcctcatgtcagtgcttcgtctttccgtcaattggttcatcatataca---- |
142 |
Q |
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| T |
10035991 |
tattacttacattttcatcaccac-agagacaatgccattctcatctaggctcatggaagtgcttcatcttttcatcaatttgttcatcatatacaagat |
10035893 |
T |
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| Q |
143 |
aaattgttgtcttcttcacaa |
163 |
Q |
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| T |
10035892 |
aaattgttgtcatcttcacaa |
10035872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
| Q |
205 |
caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
264 |
Q |
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| T |
10035758 |
caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa |
10035699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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