View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_49 (Length: 353)
Name: NF9612A_low_49
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 75 - 352
Target Start/End: Complemental strand, 8412300 - 8412021
Alignment:
| Q |
75 |
tttcaaatttaccattaaccacgt--tgtttgtttataacttctttaatgcctgtgatnnnnnnnnnnnnnttacttcaaagaccattgtaagatgaaca |
172 |
Q |
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| T |
8412300 |
tttcaaatttaccattaatcacgtattgtttgtttataacttctttaatgcctgtgataaaaaaagaaaaattacttcaaagaccgttgtaagatgaaca |
8412201 |
T |
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| Q |
173 |
aaggcattgaaagttgtttatcttataaggagcaattggagaatagaagagaagtgaatatcttataaggaaatgccttcaaacatctatggaaactgtt |
272 |
Q |
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| T |
8412200 |
aaggcattgaaagttgtttatcttataaggagcaattggagaatagaagagaagtgaatatcttataaggaaatgccttcaaccatctatggaaactgtt |
8412101 |
T |
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| Q |
273 |
tgacaaaatccgtgaaagaaggatcaaggtttcatggaatgtattcattgcttctttcttatgcacatgattgagagtat |
352 |
Q |
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| T |
8412100 |
tgacaaaaagcgtgaaagaaggatcaaggtttcatggaatgtattcattgcttctttcttatgcacatgattgagagtat |
8412021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 8451737 - 8451675
Alignment:
| Q |
289 |
agaaggatcaaggtttcatggaatgtattcattgcttctttcttatgcacatgattgagagta |
351 |
Q |
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| T |
8451737 |
agaaggagcaaggtttcatggaatgtaatcattgcttctttcttatgcacatgttggagagta |
8451675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 8479763 - 8479833
Alignment:
| Q |
264 |
gaaactgtttgacaaaatccgtgaaagaaggatcaaggtttcatggaatgtattcattgcttctttcttat |
334 |
Q |
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| T |
8479763 |
gaaactgtttgacaaactgcacgaaagaaggagcaaggtttcatggaatgtaatcattgcttctttcttat |
8479833 |
T |
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