View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_50 (Length: 353)
Name: NF9612A_low_50
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 28 - 333
Target Start/End: Complemental strand, 42264609 - 42264304
Alignment:
| Q |
28 |
catatatagaacaaagagggaaggcgctatgttaataggtatcttgtgcacgcaactgcaaagactaacaatggatggcaaaactcttcctcaagagaaa |
127 |
Q |
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| T |
42264609 |
catatatagaacaaagagggaaggcgctatgttaataggtatcttgtgcacgcaactgcaaagactaacaatggatggcaaaactcttcctcaagagaaa |
42264510 |
T |
|
| Q |
128 |
atcagcgcgatttttcaataggtgggtaaatagtttgcacaaaaccgatggacatgaaaactaccaacactctttaatctgggtaaaaacttaacaaagt |
227 |
Q |
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| T |
42264509 |
atcagcgcgatttttcaataggtgggtaaatagtttgcacaaaaccgatggacatgaaaactaccaacactctttaatctgggtaaaaacttaacaaagt |
42264410 |
T |
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| Q |
228 |
tgaagaaatatgaattgtttgttcaaaaaatttcaattttgaaattcaataacccgatgaaccaaaccgattcaataatttgttatttagaaccaaaagt |
327 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264409 |
tgaagaaatatgaattgtttgttcaaaaaaattcaattttgaaattcaataacccgatgaaccaaaccgattcaataatttgttatttagaaccaaaagt |
42264310 |
T |
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| Q |
328 |
gcatgt |
333 |
Q |
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|||||| |
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| T |
42264309 |
gcatgt |
42264304 |
T |
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