View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_51 (Length: 351)
Name: NF9612A_low_51
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 54953079 - 54952736
Alignment:
| Q |
1 |
ataatactggcattcccatgtacataatggcctatgtatatataaatccttgaaattaaccatctatagaattattcatacttggcaaagtaactaatga |
100 |
Q |
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| T |
54953079 |
ataatactggcattcccatgtacataatggcctatgtatatataaatccttgaaattaaccatctatagaattattcatacttggcaaagtaactaatga |
54952980 |
T |
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| Q |
101 |
tgagtagaaaattatgctgttttgaagaaggatcaacacatgtatgtatcctcaaccattatttataggtttaaaagaattttgagaaaccgttcttgtt |
200 |
Q |
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| T |
54952979 |
tg--tagaaaatcatgctgttttgaagaaggatcaacacatgtatgtatcctcaaccattatttataggtttaaaagaattttgagaaaccgttcttgtt |
54952882 |
T |
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| Q |
201 |
gtatcttgagattgtttttgacattttgcatatgaagaagatcttccttttctgtgcttccttcttggttgtgttgttgactgtgggataaacacacctg |
300 |
Q |
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| T |
54952881 |
gtatcttgagattgtttttgacattttgcatatgaagaagatcttccttttctgtgcttccttcttggttgtgttgttgactgtgggataaacacacctg |
54952782 |
T |
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| Q |
301 |
tccctttgctttgtcttctcaaagccatttgctcgtacaggaaatt |
346 |
Q |
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| T |
54952781 |
tccctttgctttgtcttctcaaagccatttgctcgtacaggaaatt |
54952736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 7835909 - 7835792
Alignment:
| Q |
199 |
ttgtatcttgagattgtttttgacattttgcatatgaagaagatcttccttttctgtgcttccttcttggttgtgttgttgactgtgggataaacacacc |
298 |
Q |
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| T |
7835909 |
ttgtgtcttgagactgcttttgatattttgagaatgaattagatcttcctttcttgtacctccttcttggttgtgttgct---tgtgggataaacactcc |
7835813 |
T |
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| Q |
299 |
tgtccctttgctttgtcttct |
319 |
Q |
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| T |
7835812 |
tgttcctttgctttctcttct |
7835792 |
T |
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