View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_61 (Length: 337)
Name: NF9612A_low_61
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 43408104 - 43408397
Alignment:
| Q |
26 |
cactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaaca |
125 |
Q |
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| T |
43408104 |
cactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaaca |
43408203 |
T |
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| Q |
126 |
tctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgagga |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408204 |
tctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgagga |
43408303 |
T |
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| Q |
226 |
ggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttgatgt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43408304 |
ggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttcatgt |
43408397 |
T |
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