View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_62 (Length: 336)
Name: NF9612A_low_62
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 37922564 - 37922260
Alignment:
| Q |
14 |
agacaaagatgatgaaaccagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922564 |
agacaaagatgatgaaaccagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaa |
37922465 |
T |
|
| Q |
114 |
agagattggtgatgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922464 |
agagattggtgatgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttac |
37922365 |
T |
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| Q |
214 |
cttgtcacacgacacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcagg |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922364 |
cttgccacacgacacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcagg |
37922265 |
T |
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| Q |
314 |
ttctt |
318 |
Q |
| |
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||||| |
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| T |
37922264 |
ttctt |
37922260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 32 - 318
Target Start/End: Complemental strand, 37926129 - 37925843
Alignment:
| Q |
32 |
cagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaact |
131 |
Q |
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|||||||| | |||||||| ||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||||| |||||| |
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| T |
37926129 |
cagagacattgacattggtgctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact |
37926030 |
T |
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| Q |
132 |
caacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaat |
231 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| | ||| ||||||||| |
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| T |
37926029 |
taacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaat |
37925930 |
T |
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| Q |
232 |
cgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctt |
318 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| || || |||||||| || |||||||||||||||| ||||||||| |
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| T |
37925929 |
cgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctt |
37925843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 37937838 - 37937562
Alignment:
| Q |
14 |
agacaaagatgatgaaaccagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| |
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| T |
37937838 |
agacaaagatgatgaaaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaa |
37937739 |
T |
|
| Q |
114 |
agagattggtgatgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttac |
213 |
Q |
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||| | |||| || || ||||||||||| || || |||||||||||||||||||||||||| || |||||| |||||||||||||||||||| ||||| |
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| T |
37937738 |
agaagtcggtgctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttac |
37937639 |
T |
|
| Q |
214 |
cttgtcacacgacacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgc |
290 |
Q |
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|| | ||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37937638 |
ctcgccacccgttacaatcgttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgc |
37937562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 26285244 - 26285329
Alignment:
| Q |
229 |
aatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggt |
314 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||| ||||| ||||| |
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| T |
26285244 |
aatcgtgctcatgttattgctcttggtgcttttctttgggctgctgctacttttcttgttgccttctcctccactttctttcaggt |
26285329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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