View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_64 (Length: 335)
Name: NF9612A_low_64
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 8522379 - 8522053
Alignment:
| Q |
9 |
aatgacgaggaaccatagttcaatcacgaatcagaattaga------tggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttg |
102 |
Q |
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| T |
8522379 |
aatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaattattttctcttttgtctgttg |
8522280 |
T |
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| Q |
103 |
ggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttgtggtctcaggtctgtttataagtgcacgc |
202 |
Q |
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| T |
8522279 |
ggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttatggtctcaggtctgtttataagtgcatgc |
8522180 |
T |
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| Q |
203 |
cacatgttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatacgacccttttacctttgttattctgtt |
302 |
Q |
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| T |
8522179 |
cacaagttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatatgacctttttaactttgttattctgtt |
8522080 |
T |
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| Q |
303 |
ttggcttatttggtgcatagttggtac |
329 |
Q |
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| T |
8522079 |
ttggcttatttggtgcataattggtac |
8522053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 42122739 - 42122646
Alignment:
| Q |
26 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctgtt |
119 |
Q |
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| T |
42122739 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt |
42122646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 42116966 - 42116886
Alignment:
| Q |
36 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
116 |
Q |
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| T |
42116966 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct |
42116886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 42128134 - 42128044
Alignment:
| Q |
26 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
116 |
Q |
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| T |
42128134 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct |
42128044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 42116084 - 42116035
Alignment:
| Q |
260 |
ataattcaaatttatacgacccttttacctttgttattctgttttggctt |
309 |
Q |
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| T |
42116084 |
ataattcacatttatatgacccttttacctttgcaattctgttttggctt |
42116035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 42116854 - 42116793
Alignment:
| Q |
186 |
tgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgtt |
247 |
Q |
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| T |
42116854 |
tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttatatatatgtt |
42116793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 41572860 - 41572910
Alignment:
| Q |
42 |
gaattagatggtgcaaatgtcgtagttttattgttgtaattattttctctt |
92 |
Q |
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| T |
41572860 |
gaattagatggtgcagatgtgatagttttattgttctgattattttctctt |
41572910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 11117396 - 11117289
Alignment:
| Q |
26 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaac |
124 |
Q |
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| T |
11117396 |
gttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaat |
11117297 |
T |
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| Q |
125 |
aagcttga |
132 |
Q |
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| T |
11117296 |
aagcttga |
11117289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 25523884 - 25523943
Alignment:
| Q |
36 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgt |
96 |
Q |
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| T |
25523884 |
gaatcagaatcagatgatgcaaatgtcatagttt-attgttttagttattttctcttttgt |
25523943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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