View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_66 (Length: 333)
Name: NF9612A_low_66
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_66 |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 41570280 - 41569968
Alignment:
| Q |
2 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaacaa-t |
100 |
Q |
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| T |
41570280 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaggacatggttcaagctcctagtagaagaaaacggatcgaacacatctaaaaaat |
41570181 |
T |
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| Q |
101 |
aaaacaggaaagaaagataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttac |
200 |
Q |
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| T |
41570180 |
aaaacaggaaagaaaaataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttac |
41570081 |
T |
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| Q |
201 |
aagtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatggcgctggtgttga |
300 |
Q |
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| T |
41570080 |
aagtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatggcgctggtgttga |
41569981 |
T |
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| Q |
301 |
atgagcgggaggc |
313 |
Q |
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| T |
41569980 |
atgagcgggaggc |
41569968 |
T |
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Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 9099 - 9193
Alignment:
| Q |
2 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
96 |
Q |
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| T |
9099 |
gaagcagaaaggaatggattgtccattaattgatccaccatgttaagcacctggctcaaactcctagttggagaaaacggatcaaacacatctaa |
9193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 246534 - 246482
Alignment:
| Q |
258 |
tcatcgaagagttcatcgtactggcgcatggcgctggtgttgaatgagcggga |
310 |
Q |
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| T |
246534 |
tcatcggagcgttcgtcgtactggcgcatggcgttggtgttgaatgaacggga |
246482 |
T |
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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 98216 - 98174
Alignment:
| Q |
268 |
gttcatcgtactggcgcatggcgctggtgttgaatgagcggga |
310 |
Q |
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| T |
98216 |
gttcgtcgtactggcgcatggcgttggtgttgaatgaacggga |
98174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 19769314 - 19769276
Alignment:
| Q |
272 |
atcgtactggcgcatggcgctggtgttgaatgagcggga |
310 |
Q |
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| T |
19769314 |
atcgtactggcgcatggcgttggtgttgaatgaacggga |
19769276 |
T |
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