View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_68 (Length: 330)
Name: NF9612A_low_68
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 325
Target Start/End: Original strand, 30315727 - 30316046
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30315727 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30315826 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30315827 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggca |
30315926 |
T |
|
| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta-nnnnnnnctca |
305 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
30315927 |
ttatcttgtaattgtaactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttactactattttttttctca |
30316026 |
T |
|
| Q |
306 |
taatactcatctatgctact |
325 |
Q |
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|||||||||||||||||||| |
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| T |
30316027 |
taatactcatctatgctact |
30316046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 30304861 - 30305147
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30304861 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30304960 |
T |
|
| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||| |||||||| ||| ||||| | |||||||||| || |
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| T |
30304961 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggca |
30305060 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta |
294 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
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| T |
30305061 |
ttatcttgtaactataactagagttccacc-tttctactatgaataactgaatcaagaataagttttgagccacctctcttgctacta |
30305147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 30287193 - 30287462
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30287193 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30287292 |
T |
|
| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |
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| T |
30287293 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggca |
30287392 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctc |
283 |
Q |
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| T |
30287393 |
ttatcttg------taactagagttcctcc-tttctactatgaataaattaatcaagaataagttttgtgcctcctc |
30287462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 30300069 - 30300349
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30300069 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30300168 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || |
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| T |
30300169 |
ttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggca |
30300268 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta |
294 |
Q |
| |
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||||||| || ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30300269 |
atatcttg------tatctagagttccacc-tttccaccatgaataaattaatcaagaataagttttgtgccacctctcttactacta |
30300349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 30292227 - 30292485
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292227 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
30292326 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
| |
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||||||||||||||| |||| | |||||||| |||||||| |||||||| || |||||||||||||||| |||||||||| || |
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| T |
30292327 |
ctatttcttcaatttcgggaacgttttaatg--------cttattatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggca |
30292409 |
T |
|
| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctc |
283 |
Q |
| |
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||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30292410 |
ttagcttgtaactataactagagttcca-ctttcctactatgaataaattaatcaagaacaagttttgtgccacctc |
30292485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 46810518 - 46810582
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaaggga |
71 |
Q |
| |
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||||| |||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
46810518 |
gttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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