View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_73 (Length: 313)
Name: NF9612A_low_73
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_73 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35343435 - 35343137
Alignment:
| Q |
1 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttttatgttatatataactagaagagaacttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35343435 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttttgtgttatatataactagaagagaacttgtt |
35343336 |
T |
|
| Q |
101 |
gagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35343335 |
gagttattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagctttgctacgtgcctgcatgtgtaatggcatattgggcagc |
35343236 |
T |
|
| Q |
201 |
cacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35343235 |
cacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
35343137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 75 - 299
Target Start/End: Original strand, 35368411 - 35368637
Alignment:
| Q |
75 |
tatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaa-ggtgtgagcattgctacgtgc |
172 |
Q |
| |
|
||||||||||||||||| || |||||| ||| ||| | ||||| |||||||||||||||||||||||||| ||||| || ||||||| ||||||||| |
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|
| T |
35368411 |
tatatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaaggaatgagcatggctacgtgc |
35368510 |
T |
|
| Q |
173 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35368511 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35368610 |
T |
|
| Q |
273 |
aatagaatgtttgagtggatgcatata |
299 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35368611 |
aatagaatgtttgagtggatgcatata |
35368637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35348125 - 35347809
Alignment:
| Q |
1 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgag-----------ttaggattagagagttt-tatgttatatataactaga |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| | ||||||||||||| ||| |
|
|
| T |
35348125 |
gaagaaaatggaattagttatatgatatgctaaggtagttgtgtgagttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaaga |
35348026 |
T |
|
| Q |
89 |
agagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgta--atg |
186 |
Q |
| |
|
|||||| |||||||||| ||| | ||||| ||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| ||| |
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|
| T |
35348025 |
agagaagttgttgagtagttctaacacaagcaaaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatatg |
35347926 |
T |
|
| Q |
187 |
gcatattgggcagccacattggcaattgtctttacaattcagcttaaat----gt-tggaaatagcagtaaagaatcaagaatattgacaaaatagaatg |
281 |
Q |
| |
|
| | ||| |||||||||||||||||||||| ||||||||||| || || || |||||| || || ||||| ||||||||||||||||||||||||| |
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|
| T |
35347925 |
gggtcttgtgcagccacattggcaattgtctctacaattcagcatatatacacgtatggaaa-agaagcaaagactcaagaatattgacaaaatagaatg |
35347827 |
T |
|
| Q |
282 |
tttgagtggatgcatata |
299 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35347826 |
tttgagtggatgcatata |
35347809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 35355849 - 35356157
Alignment:
| Q |
1 |
gaagaaaatggaattagttatatgatatgc--taagatagttgtgtgagttgagtt-----------aggattagagagttt-tatgttatatataacta |
86 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||| | ||||||||||||| | |
|
|
| T |
35355849 |
gaagaaaatggaattagttatatgatatacactaaggtagttgtgtgagttgagttgtgtttgagttaggattggagagtttgtgtgttatatataacaa |
35355948 |
T |
|
| Q |
87 |
gaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaat |
185 |
Q |
| |
|
||||| |||||| ||| ||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
35355949 |
aaagagtg-ttgttggagttgttctaacacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaat |
35356047 |
T |
|
| Q |
186 |
ggcatattgggcagccacattggcaattgtctttaca-attcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgttt |
284 |
Q |
| |
|
| || ||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35356048 |
agaatcttgtgcagccacattggcaattgtctttacacattcagcttacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgttt |
35356147 |
T |
|
| Q |
285 |
gagtggatgc |
294 |
Q |
| |
|
|||||||||| |
|
|
| T |
35356148 |
gagtggatgc |
35356157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 295
Target Start/End: Original strand, 35374536 - 35374784
Alignment:
| Q |
48 |
ttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgttt |
145 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||| | ||||| |||||| ||| ||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
35374536 |
ttgagttaggattggagagtttgtgtgttatatataacaaaaagagttgttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgttt |
35374635 |
T |
|
| Q |
146 |
acttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaata |
245 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| | || ||| |||||||||||||||||||||||||| ||||||| || | |||||||||| |
|
|
| T |
35374636 |
gcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttac-attcagcatacacgttggaaata |
35374734 |
T |
|
| Q |
246 |
gcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
295 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374735 |
gcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
35374784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 299
Target Start/End: Original strand, 35335792 - 35336017
Alignment:
| Q |
73 |
gttatatataactagaagagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgc |
172 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| | ||||| ||||||| || ||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
35335792 |
gttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaaggtgtgagcatggctcggtgc |
35335891 |
T |
|
| Q |
173 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa |
272 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||| | |||||||| || || |||||||||||||||||||||| |
|
|
| T |
35335892 |
ctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattcaacttacacgttggaaa-agaagcaaagaatcaagaatattgacaa |
35335990 |
T |
|
| Q |
273 |
aatagaatgtttgagtggatgcatata |
299 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
35335991 |
aataaaatgtttgagtggatgcatata |
35336017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 35364638 - 35364826
Alignment:
| Q |
112 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaa |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
35364638 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggcat |
35364737 |
T |
|
| Q |
212 |
ttgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaa-tgtttgagtggatgcatata |
299 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || || ||||||||||||||| || |||||| || | ||| |||||||||||||| |
|
|
| T |
35364738 |
ttgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaaatataatttttttagtggatgcatata |
35364826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 35346345 - 35346530
Alignment:
| Q |
113 |
cacaattaaaccacacaagaagtgtgtatgt--ttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggca |
210 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || |||||||||||||||| ||| |||||||||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
35346345 |
cacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagccacattggca |
35346444 |
T |
|
| Q |
211 |
attgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
299 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||| | ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
35346445 |
attgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata---accaaatagaatgtttgagtggatgcatata |
35346530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 35351430 - 35351603
Alignment:
| Q |
131 |
gaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagct |
230 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| ||||||||| ||||||||||||| || ||| |||||||||||||||||||| |||| || ||||| |
|
|
| T |
35351430 |
gaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggcaattgtttttataagtcagca |
35351529 |
T |
|
| Q |
231 |
taaatgttggaaatagcag-----taaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
299 |
Q |
| |
|
| | ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35351530 |
tgcacgttggaagaagcagcaaattaaagaatcaagaatattgaaaaaatcgaatgtttgagtggatgcatata |
35351603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 35371815 - 35371983
Alignment:
| Q |
112 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaa |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| | |||||||||||| || ||| ||||| |||||||| |
|
|
| T |
35371815 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatcttgtgcagcatcattggcat |
35371914 |
T |
|
| Q |
212 |
ttgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtt |
283 |
Q |
| |
|
|| |||||||||||||||||| | |||| || |||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
35371915 |
ttctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaatagaatgtt |
35371983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 294
Target Start/End: Original strand, 35340911 - 35341188
Alignment:
| Q |
37 |
agttgtgtgagttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg-agtaattccacc-------acaattaaaccaca |
127 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| | || |||||||||| |||||||||||||||| ||| ||| || |||| |||||||| |
|
|
| T |
35340911 |
agttgtgtgagttgagttagtattggagagtttgtgtgatatatataacaagaagagaacttgttggagttgttctccctcctccaacaagcaaaccaca |
35341010 |
T |
|
| Q |
128 |
caagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaat-----ggcatattgggcagccacattggcaa--ttgtcttta |
220 |
Q |
| |
|
|| |||||||||| || ||| ||||||| |||| ||| ||| ||| |||||||| || || ||| |||||||||||||||| ||||||||| |
|
|
| T |
35341011 |
caggaagtgtgtaatattgcttcaggtgtgtgcatcgctcattgcttgcttgtgtaatataatgggatcttgtgcagccacattggcaaaattgtcttta |
35341110 |
T |
|
| Q |
221 |
caattcagcttaaatgttggaaatagcagtaaagaatcaagaat----attgacaaaatagaatgtttgagtggatgc |
294 |
Q |
| |
|
||||||||| || | ||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35341111 |
caattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgc |
35341188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35346222 - 35346289
Alignment:
| Q |
1 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttt |
69 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
35346222 |
gaagaaaatg-aattagctatattggatgctaagttagttgtgtgagctgagttaggattggagagttt |
35346289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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