View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_76 (Length: 309)
Name: NF9612A_low_76
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 1852493 - 1852240
Alignment:
| Q |
30 |
tatacccaaataatttttgaagattcttgcatttctttattttcataaaactcaagctnnnnnnntaattaaattaaacgaataatgtctttcttacatt |
129 |
Q |
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| T |
1852493 |
tatacccaaataatttttgaagattcttgcatttctttcttttcataaaactcaagctaaaaaaataattaaattaaacgaataatgtctttcttacatt |
1852394 |
T |
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| Q |
130 |
tataaatgcctttgaagaaaccaaattaatataaatgatttgaaatattaaacagcgcaaccaagacaaagttttaccaatcgtacaacaaaccaaattt |
229 |
Q |
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| T |
1852393 |
tataaatgcctttgaagaaaccaaattaatataaatgatttgaaatattaaacagcacaaccaagacaaagttttaccaatcgtacaacaaaccaaattt |
1852294 |
T |
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| Q |
230 |
gatggaaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacg |
283 |
Q |
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| T |
1852293 |
gatggaaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacg |
1852240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 282
Target Start/End: Original strand, 34383856 - 34384091
Alignment:
| Q |
48 |
gaagattcttgcatttctttattttcataaaactcaagctnnnnnnntaattaaattaaacgaataatgtctttcttacatttataaatgcctttgaaga |
147 |
Q |
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| T |
34383856 |
gaagattcttgcatttctttctttccatgaaactcaagctaaaga--taatcacactaaataaataatgtctttcttatgtttagaaaagcctctgaatg |
34383953 |
T |
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| Q |
148 |
aaccaaattaatataaatgatttgaaatattaaacagcgcaaccaagacaaagttttaccaatcgtaca--acaaaccaaatttgatgga-aaaatcgca |
244 |
Q |
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| T |
34383954 |
aaccaaactaagctaaatgattaagaatattaaatggcataaccaatacaaagactaaccaatcgtacacaacaaaccaaattttagagagaaaattgca |
34384053 |
T |
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| Q |
245 |
atgaaagaatagatgagccacgtcctctaaattaccac |
282 |
Q |
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| T |
34384054 |
atgaaaaaatagatgagcagcgttctctaaattaccac |
34384091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 26482783 - 26482904
Alignment:
| Q |
161 |
taaatgatttgaaatattaaacagcgcaaccaagacaaagttttaccaatcgt--acaacaaaccaaatttgatgg-aaaaatcgcaatgaaagaataga |
257 |
Q |
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|||||||| |||||||||||| ||| |||||||| ||||| | | ||||| | |||||||||||||||||| || |||||| |||| ||| |||||| |
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| T |
26482783 |
taaatgatatgaaatattaaatggcgtaaccaagataaagtctaatcaatcatacacaacaaaccaaatttgacggtaaaaattgcaacgaagaaataga |
26482882 |
T |
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| Q |
258 |
tgagccacgtcctctaaattac |
279 |
Q |
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| T |
26482883 |
tgagcggcgtcctctagattac |
26482904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 29537186 - 29537285
Alignment:
| Q |
165 |
tgatttgaaatattaaacagcgcaaccaagacaaagttttaccaatcgtaca--acaaaccaaatttgatggaaaaatcgcaatgaaagaatagatgagc |
262 |
Q |
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|||| |||||||||||| | ||||| || |||||| | ||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
29537186 |
tgatctgaaatattaaatggtgcaactaatacaaagcctaaccaatcatacaccacaaaccaaatttgacggaaaaattgcaatgaagaaatagatgagc |
29537285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 21082371 - 21082325
Alignment:
| Q |
41 |
aatttttgaagattcttgcatttctttattttcataaaactcaagct |
87 |
Q |
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| T |
21082371 |
aattcttgaagattcttgcatttctttctttccataaaacccaagct |
21082325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 134105 - 134002
Alignment:
| Q |
161 |
taaatgatttgaaatattaaacagcgcaaccaagacaaagttttaccaatc--gtacaacaaaccaaatttgatggaaaaa-tcgcaatgaaagaataga |
257 |
Q |
| |
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|||||||| ||||||||||| | | | ||||||||||||| | ||||||| |||||| |||||||||||| ||||||| | |||||||| |||||| |
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| T |
134105 |
taaatgatctgaaatattaagcggagtaaccaagacaaagcctaaccaatcatatacaactaaccaaatttgacggaaaaagttgcaatgaagaaataga |
134006 |
T |
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| Q |
258 |
tgag |
261 |
Q |
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|||| |
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| T |
134005 |
tgag |
134002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 10093467 - 10093320
Alignment:
| Q |
104 |
taaacgaataatgtctttcttacatttataaatgcctttgaagaaaccaaattaatataaatgatttgaaatattaaacagcgcaaccaagacaaagttt |
203 |
Q |
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||||| |||||| |||||||| | |||| ||| | | ||||| ||||||| | | |||||| | ||||||| ||||| || |||||| |||||| | |
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| T |
10093467 |
taaacaaataatatctttcttgcgtttagaaaaacttctgaaggaaccaaactgagctaaatggtgtgaaatagtaaacgacgtaaccaaaacaaagcct |
10093368 |
T |
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| Q |
204 |
taccaatcgtaca--acaaaccaaatttgatggaaaaatcgcaatgaa |
249 |
Q |
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||||||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
10093367 |
aaccaatcatacacaacaaaccaaatttgaccgaaaaatcgcaatgaa |
10093320 |
T |
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