View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_81 (Length: 302)

Name: NF9612A_low_81
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_81
NF9612A_low_81
[»] chr7 (14 HSPs)
chr7 (25-296)||(4864226-4864497)
chr7 (32-296)||(4696713-4696974)
chr7 (32-296)||(4711595-4711856)
chr7 (26-213)||(4673008-4673195)
chr7 (32-296)||(4637168-4637429)
chr7 (34-296)||(4783358-4783617)
chr7 (34-296)||(4815787-4816046)
chr7 (108-296)||(4653883-4654068)
chr7 (36-296)||(4845535-4845792)
chr7 (26-186)||(4667246-4667406)
chr7 (144-214)||(4644130-4644200)
chr7 (245-294)||(4644216-4644265)
chr7 (245-275)||(4631451-4631481)
chr7 (32-102)||(4644018-4644088)
[»] chr4 (1 HSPs)
chr4 (33-214)||(18925344-18925525)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 4864226 - 4864497
Alignment:
Q  25 atcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4864226 atcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagt 4864325  T
Q  125 gatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864326 gatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttg 4864425  T
Q  225 attgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864426 attgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 4864497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 296
Target Start/End: Complemental strand, 4696974 - 4696713
Alignment:
Q  32 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca 131  Q
    |||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||    
T  4696974 ggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatca 4696875  T
Q  132 aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt 231  Q
    ||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || ||    
T  4696874 aatgatattttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtt 4696775  T
Q  232 tatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    ||| ||  ||   ||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  4696774 tatgttgctg---ggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatatt 4696713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 32 - 296
Target Start/End: Complemental strand, 4711856 - 4711595
Alignment:
Q  32 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca 131  Q
    |||||||||||| ||| ||| || ||||||||||| ||| | || || |||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  4711856 ggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttca 4711757  T
Q  132 aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt 231  Q
    ||   |||||||||||||| ||||  |||||||| |||||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||    
T  4711756 aaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatt 4711657  T
Q  232 tatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    ||| || ||    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4711656 tatgttgtt---tggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatatt 4711595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 4673008 - 4673195
Alignment:
Q  26 tcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtg 125  Q
    |||||||||||||||||||||||||| || ||||||||||||||| | || || ||||| |||||| ||| |||||| ||||||||||| ||||||||||    
T  4673008 tcacccggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtg 4673107  T
Q  126 atttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcata 213  Q
    ||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||| | ||| ||||| |||||||| |||||    
T  4673108 atttcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcata 4673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 32 - 296
Target Start/End: Original strand, 4637168 - 4637429
Alignment:
Q  32 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca 131  Q
    |||||||||||| ||| ||| || ||||||||||||||| |||| || |||||||| ||| ||| | |||| |||||||  ||  |||||| || |||||    
T  4637168 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttca 4637267  T
Q  132 aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt 231  Q
    |||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||| ||||||||||||| ||    
T  4637268 aatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtt 4637367  T
Q  232 tatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    |||  | ||    ||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||    
T  4637368 tatgctgtt---aggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatatt 4637429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 4783617 - 4783358
Alignment:
Q  34 tggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaa 133  Q
    |||||||||| ||| ||| || ||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||  || || | || | |    
T  4783617 tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgata 4783518  T
Q  134 taatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgattta 233  Q
      ||| | | ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||  |||| |  |||| |||     
T  4783517 agataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttg 4783418  T
Q  234 tattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    | || |||   |||||||||||||||||||||||||| |||| ||||||||| ||| ||||||    
T  4783417 tgttgttg---ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt 4783358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 4816046 - 4815787
Alignment:
Q  34 tggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaa 133  Q
    |||||||||| ||| ||| || ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |  || || | || | |    
T  4816046 tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgata 4815947  T
Q  134 taatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgattta 233  Q
      ||| | | ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||  |||| |  |||| |||     
T  4815946 cgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttg 4815847  T
Q  234 tattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    | || |||   |||||||||||||||||||||||||| |||| ||||||||| ||| ||||||    
T  4815846 tgttgttg---ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt 4815787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 296
Target Start/End: Original strand, 4653883 - 4654068
Alignment:
Q  108 tgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaa 207  Q
    |||||||  ||||||||||||| || | ||| |||||| |||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  4653883 tgttgtctgagtcaagtgatttgaagtcataatttggggcattgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaa 4653982  T
Q  208 ggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
     ||||||||||||||||| || ||| | || |||   ||||||||||||||||||||||||| ||| | || || ||| ||||||||||    
T  4653983 agcataataaggatttgaatggtttgtgttgttg---ggaatgaaagttatgtttagcttcttattcggttggacttggatgcaatatt 4654068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 296
Target Start/End: Complemental strand, 4845792 - 4845535
Alignment:
Q  36 gaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaata 135  Q
    |||||||| ||||||| |||||||||||||||||| |||| || ||||| || ||| ||| || ||| ||  ||||||||||| ||| | |||| |||||    
T  4845792 gaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaata 4845693  T
Q  136 atattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttata 235  Q
    ||| |||  |||||   ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||| ||| |||||| |||||||  |||  |||||     
T  4845692 ataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatg 4845593  T
Q  236 ttattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt 296  Q
    || ||   ||||| ||||||||||||||||||| |||||| |||||| |||||||||||||    
T  4845592 ttgtt---cggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatatt 4845535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 4667246 - 4667406
Alignment:
Q  26 tcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtg 125  Q
    ||||| |||||||||||||||||||| ||  ||||||||||||||||||| |  ||||||| |||| |||  ||||| ||  || ||||||||||||||     
T  4667246 tcaccaggtggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagta 4667345  T
Q  126 atttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacac 186  Q
    || |||||| ||| ||||||||| |||||||||||||||| |||||||| |||||||||||    
T  4667346 atgtcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagacggcatagacac 4667406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4644130 - 4644200
Alignment:
Q  144 ggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa 214  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||    
T  4644130 ggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa 4644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 4644216 - 4644265
Alignment:
Q  245 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaata 294  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  4644216 ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaata 4644265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 275
Target Start/End: Original strand, 4631451 - 4631481
Alignment:
Q  245 ggaatgaaagttatgtttagcttctcatttg 275  Q
    |||||||||||||||||||||||||||||||    
T  4631451 ggaatgaaagttatgtttagcttctcatttg 4631481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 4644018 - 4644088
Alignment:
Q  32 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggta 102  Q
    |||||||||||| ||  ||| || ||||||||||||||| |||| || |||||||| ||||||| ||||||    
T  4644018 ggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggta 4644088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 18925525 - 18925344
Alignment:
Q  33 gtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaa 132  Q
    ||||||||||| | ||||| ||  ||||||||||||||||||||||| |||||||  |    | || ||| | | |||| |||| | ||||| | || ||    
T  18925525 gtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaa 18925426  T
Q  133 ataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa 214  Q
    || ||  |||| ||||||||||||||||||||| |||||||||||||| |||||||  || ||||| || ||||| ||||||    
T  18925425 atgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa 18925344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University