View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_84 (Length: 299)

Name: NF9612A_low_84
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_84
NF9612A_low_84
[»] chr8 (1 HSPs)
chr8 (9-299)||(11213843-11214133)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 11213843 - 11214133
Alignment:
Q  9 tggtgttggcgaagaggaagcgattgaagaaggagaatgggttggaggaagatgggtttgttcctgtgttgaatttgaaggtgttttcgtacaaggagct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11213843 tggtgttggcgaagaggaagcgattgaagaaggagaatgggttggaggaagatgggtttgttcctgtgttgaatttgaaggtgttttcttacaaggagct 11213942  T
Q  109 tcaattggcgactcgagggttttctgagaaacttgggcatggtgggtttgggacggtgtttcaaggggagttgagtgattctactgttgttgctgtgaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11213943 tcaattggcgactcgagggttttctgagaaacttgggcatggtgggtttgggacggtgtttcaaggggagttgagtgattctactgttgttgctgtgaaa 11214042  T
Q  209 cgtttagagaggccgggaggtggagagaaagagtttagggctgaggtttcaacgattgggaacattcagcatgttaatcttgtgaggttaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11214043 cgtttagagaggccgggaggtggagagaaagagtttagggctgaggtttcaacaattgggaacattcagcatgttaatcttgtgaggttaa 11214133  T

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