View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_9 (Length: 452)
Name: NF9612A_low_9
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 6 - 437
Target Start/End: Original strand, 26846922 - 26847351
Alignment:
| Q |
6 |
aataaggtaattggtgcacttttttgttctctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagtt |
105 |
Q |
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| T |
26846922 |
aataaggtaattggtgcacttttttgttccctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagtt |
26847021 |
T |
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| Q |
106 |
ggatatgttttttggtattgtttcaggattattatgaacggaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagatt |
205 |
Q |
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| T |
26847022 |
ggatatgttttttggtattgtttcaggattattatgaacagaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagatt |
26847121 |
T |
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| Q |
206 |
ccctcagcttagtgctaattcgaatgttccccagattgattctttagatggggttatgaaaatgcaacatacaaaagctgttgaaggatacaaagttcct |
305 |
Q |
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| T |
26847122 |
ccctcagcttagtgctaattcgaatgttccc--aattgattctttagatggggttatgaaaatgcaacatacaaaagctgttgaaggatacaaagttcct |
26847219 |
T |
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| Q |
306 |
tcaactagtccttcattcatcaaacaatgtagaggcactcgttaataaacttctgtaaaaatctgttnnnnnnntctcccatcatttgttttcttatcca |
405 |
Q |
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| T |
26847220 |
tcaactagtccttcattcatcaaacaatgtagaggcactcgttaataaacttctgtaaaaatctgttaaaaaaatctcccatcatttgttttcttatccg |
26847319 |
T |
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| Q |
406 |
tttacaatttttatctagaatttctatgcaat |
437 |
Q |
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| T |
26847320 |
tttacaatttttatctagaatttctatgcaat |
26847351 |
T |
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