View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_91 (Length: 296)
Name: NF9612A_low_91
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 7338376 - 7338094
Alignment:
| Q |
6 |
aacaagtgtagatatttattgaaataaatgtagatattagaatttgag--cttcttacattaaatcacgtgcatatactttgcttgcataaatcggacca |
103 |
Q |
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| T |
7338376 |
aacaagtgtagatatttattgaaacaaatgtagatattagaatttgagagcttcttacattaaatcacgtgcatatactttgcttgcataaatcgtacca |
7338277 |
T |
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| Q |
104 |
aacatggtagcaaatagaaggatgtaatgattccatccacaacagctactttattttatggacaacttaattagttcaagcgtaaaattgaaggaagaat |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7338276 |
aacatggtagcaaatagaagtatgtaatgattccatccacaacaactgctttattttatggacaacttaattagttcaagcgtaaaattgaaggaagaat |
7338177 |
T |
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| Q |
204 |
ctaccagaagtaagaattaaaaaagaagctcaagatctaatactttctttacctatgtaatgaatcttgatctatcagaataa |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7338176 |
ctaccagaagtaagaattaaaaaagaagctcaagatctaatactttctttagctatgtaatgaatcttgatctatcagaataa |
7338094 |
T |
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