View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_93 (Length: 293)

Name: NF9612A_low_93
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_93
NF9612A_low_93
[»] chr6 (16 HSPs)
chr6 (7-284)||(33641910-33642187)
chr6 (7-279)||(31566422-31566694)
chr6 (20-284)||(33060078-33060342)
chr6 (7-279)||(33306996-33307268)
chr6 (21-279)||(33412442-33412700)
chr6 (20-279)||(33361021-33361280)
chr6 (7-279)||(33390583-33390855)
chr6 (7-251)||(33403121-33403365)
chr6 (7-279)||(33288085-33288357)
chr6 (22-279)||(33265407-33265664)
chr6 (22-279)||(33274551-33274808)
chr6 (7-170)||(9169368-9169531)
chr6 (70-121)||(12785512-12785563)
chr6 (70-129)||(12781322-12781381)
chr6 (70-121)||(12786252-12786303)
chr6 (70-122)||(12782073-12782125)
[»] chr2 (2 HSPs)
chr2 (7-279)||(17437987-17438259)
chr2 (70-116)||(35054860-35054906)
[»] scaffold1749 (1 HSPs)
scaffold1749 (21-279)||(670-928)
[»] scaffold0428 (1 HSPs)
scaffold0428 (21-279)||(9431-9689)
[»] chr4 (11 HSPs)
chr4 (9-279)||(31501424-31501694)
chr4 (9-279)||(31496254-31496524)
chr4 (9-124)||(31476469-31476584)
chr4 (20-123)||(31020394-31020497)
chr4 (20-123)||(31489055-31489158)
chr4 (25-123)||(31030280-31030378)
chr4 (25-123)||(31159801-31159899)
chr4 (20-125)||(31162173-31162278)
chr4 (21-129)||(31529056-31529164)
chr4 (73-208)||(31244422-31244557)
chr4 (174-208)||(31159950-31159984)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 33642187 - 33641910
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33642187 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 33642088  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33642087 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 33641988  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagaataat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33641987 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaat 33641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 31566694 - 31566422
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||    
T  31566694 gacaccatctgagagtcttgtcggaatctttgttcatgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcat 31566595  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    | |||| | ||||||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||    
T  31566594 agaaaacaagaagaacatgtttttcagattcctcaatgcattcacaaatcttctctaattcttgcaagcaccatgtcgaggaagcataatttcttgagaa 31566495  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    ||| || ||  |||||||||||| || ||||||||||||||||||||  |||||  |||||||||||||||||    
T  31566494 gacggcaacaaaaacatgagatccttggattgctcgaagaagctcaggccctatggattcacctttttgaaga 31566422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 33060078 - 33060342
Alignment:
Q  20 agtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaag 119  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| |||| ||||||    
T  33060078 agtcttgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaag 33060177  T
Q  120 aacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaa 219  Q
    |||||||||| |  | |||| |||||||||||| ||||| ||||||||||| | |||||| |||||||||||||||||  |||||||||  || ||||||    
T  33060178 aacatgttttcccgaccccttaatgcattcacatatcttttctaattcttgcaagcaccacgttgaggaagcatagttctttgagaagatcgcaacgtaa 33060277  T
Q  220 acatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagaataat 284  Q
    || |||||| |||||||||| |||| |||||||| ||||||  ||||||||||||||||| ||||    
T  33060278 acctgagatatttcgattgcacgaaaaagctcaggtcctatgcattcacctttttgaagattaat 33060342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 33306996 - 33307268
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  33306996 gacaccatctcaaagtcttgttggaatctttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatcaacatcat 33307095  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    |||||| |||||||| |||||||    ||| || || ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  33307096 aaaaaacaggaagaatatgttttctggatctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatagttccttgagaa 33307195  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    |||||| ||  ||||  |||||| ||||||||||||||| ||||||| | ||||| ||||||| |||||||||    
T  33307196 gactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaaga 33307268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 33412442 - 33412700
Alignment:
Q  21 gtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaaga 120  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||||||||||| ||||||||||| |||||||    
T  33412442 gtcttgttggaatctttgttcatgtttgacaaaagattcacaataaatcccactttgcttccgcacctcagaaggatcaatatcataaaaaacaggaaga 33412541  T
Q  121 acatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaa 220  Q
    || ||||||||   ||||| ||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||| |||    
T  33412542 acgtgtttttcaggtccctgaacacattcacagatcttttctaattcttgcaggcaccatgttgaggaagcatagttccttgaaaagactgcgacgaaaa 33412641  T
Q  221 catgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    | ||||||| ||||||||| ||||| ||||||| ||||||   ||||||||||| ||||    
T  33412642 cctgagatccttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaaga 33412700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 33361021 - 33361280
Alignment:
Q  20 agtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaag 119  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||| || ||||||||||||||||||||||| |||| ||||||    
T  33361021 agtcttgttggaatctttgttcatgtttgacaaaagcttcactataaatctcactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaag 33361120  T
Q  120 aacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaa 219  Q
    |||||||||| || |||||| |||||||||||| ||||| ||||||||||| |  ||||||||||||||||||||||||||||| |||| ||| ||  ||    
T  33361121 aacatgttttcctgatcccttaatgcattcacatatcttttctaattcttgcaaacaccatgttgaggaagcatagtttcttgaaaagaatgcaacaaaa 33361220  T
Q  220 acatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    || ||||||| ||||||||||||||  ||||| | ||| ||  ||||||||||| |||||    
T  33361221 acctgagatccttcgattgctcgaatgagctcgggtccgatggattcaccttttggaaga 33361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 33390583 - 33390855
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||    
T  33390583 gacaccatctgagagttttgttggaatctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcat 33390682  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    |||||| |||||||||| |||||||  |||| |  |  ||||| ||||||||||||| |||||| |  |||||||||||| |||||||||||||||||||    
T  33390683 aaaaaacaggaagaacaagtttttcggatccttggacacattcccaaatcttctctatttcttgcaaacaccatgttgagaaagcatagtttcttgagaa 33390782  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
     || || || ||||| ||||||| |||||||| | ||||||| |||| ||||||  |||||||||||||||||    
T  33390783 aaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggattcacctttttgaaga 33390855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 33403121 - 33403365
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| | |||| ||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  33403121 gacaccatctcaaagccttgttggaatcttttttcatgcttgacaaaggcttcacaataaataccactttgctttcgaacctcagaaggatcaacatcat 33403220  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    | |||| ||||| |||||||||||   |||||| || ||||||||| ||||||||||||||||  | |||||||||||||||||||||||| ||||| ||    
T  33403221 agaaaacaggaataacatgttttttggatcccttaacgcattcacatatcttctctaattcttttaagcaccatgttgaggaagcatagttccttgaaaa 33403320  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctc 251  Q
    |||  | ||| |||| ||| ||| || ||||||||||||||||||    
T  33403321 gacgacaacgaaaacctgaaatcctttgattgctcgaagaagctc 33403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 33288085 - 33288357
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| ||| |||||||||||||| ||||||||||| ||  ||| ||||| | |||||| |||||||||||||| ||||||||||||||||||||||    
T  33288085 gacaccatctgagagtcttgttggaatgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcat 33288184  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    | ||||  |||||||  ||||||  | || | | ||  |||||||| ||||| |||||||| || | |||||||||||||||||||||||||||||||||    
T  33288185 agaaaactggaagaatgtgttttcttgatacatgaacacattcacatatcttttctaattcctgcaagcaccatgttgaggaagcatagtttcttgagaa 33288284  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
     ||||| ||| |||| || |||| ||||||||||||||| ||||||| ||||||  |||||||||||||||||    
T  33288285 tactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcacctttttgaaga 33288357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 33265407 - 33265664
Alignment:
Q  22 tcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaa 121  Q
    |||||||||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||  || ||||| |||||||||||||| ||||  |||||||    
T  33265407 tcttgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaa 33265506  T
Q  122 catgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaac 221  Q
    |||||||| || |||||| || ||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||| |||| ||||| || ||  ||||    
T  33265507 catgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaac 33265606  T
Q  222 atgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
     ||||||| ||||||||||||||| ||||| | ||| ||  ||||||||||| |||||    
T  33265607 ttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaaga 33265664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 33274551 - 33274808
Alignment:
Q  22 tcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaa 121  Q
    |||||||||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||  || ||||| |||||||||||||| ||||  |||||||    
T  33274551 tcttgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaa 33274650  T
Q  122 catgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaac 221  Q
    |||||||| || |||||| || ||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||| |||| ||||| || ||  ||||    
T  33274651 catgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaac 33274750  T
Q  222 atgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
     ||||||| ||||||||||||||| ||||| | ||| ||  ||||||||||| |||||    
T  33274751 ttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaaga 33274808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 9169368 - 9169531
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||||| ||| | |||| || ||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  9169368 gacaccatgtgagaatcttatttgaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcat 9169467  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttg 170  Q
    | |||| | |||||||||||||| || || |   ||  |||||||| ||||| |||||||||||    
T  9169468 agaaaacaagaagaacatgttttcctgatacacgaacacattcacatatcttttctaattcttg 9169531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 12785512 - 12785563
Alignment:
Q  70 ccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaa 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12785512 ccactttgcttttgtacctcagaaggatcaacatcataaaaaataggaagaa 12785563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 12781322 - 12781381
Alignment:
Q  70 ccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaacatgtttt 129  Q
    |||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||    
T  12781322 ccactttgcttttgtacctcagaaggatcaacatcatagaaaacaggaagaacgtgtttt 12781381  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 12786252 - 12786303
Alignment:
Q  70 ccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaa 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  12786252 ccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 12782073 - 12782125
Alignment:
Q  70 ccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaac 122  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  12782073 ccactttgctttcgcacctcagaaagatcaacatcataaaaaacaggcagaac 12782125  T

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Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 17438259 - 17437987
Alignment:
Q  7 gacaccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcat 106  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||||||||    
T  17438259 gacaccttctgaaggtcttgttggaatctttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatcaacatcat 17438160  T
Q  107 aaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 206  Q
    | |||| |||||||||||||||| ||    ||| || ||||||||| ||||| ||||||||||  |  |||||||||||||||||||||| |||||||||    
T  17438159 agaaaacaggaagaacatgttttcctggcacctgaacgcattcacatatcttttctaattcttccaaacaccatgttgaggaagcatagtatcttgagaa 17438060  T
Q  207 gactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
     || || ||  |||| ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  17438059 aaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaaga 17437987  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 35054860 - 35054906
Alignment:
Q  70 ccactttgctttcgtacctcagaaggatcaacatcataaaaaatagg 116  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  35054860 ccactctgctttcgtacatcagatggatcaacatcataaaaaatagg 35054906  T

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Target: scaffold1749 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 670 - 928
Alignment:
Q  21 gtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaaga 120  Q
    |||||||| ||||||||||||||||||| ||||| | ||||||||||| ||||||||||||  ||||||||||||||| ||| |||| ||||||||||||    
T  670 gtcttgtttgaatctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatcgacaccatagaaaataggaaga 769  T
Q  121 acatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaa 220  Q
    |||| |||| |  ||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||| |||    
T  770 acatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttgataagacagcaacgaaaa 869  T
Q  221 catgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    | ||||||| |||||||| |||||| ||||||| ||||||  ||||||| ||| |||||    
T  870 cctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaaga 928  T

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Target: scaffold0428 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 9431 - 9689
Alignment:
Q  21 gtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaaga 120  Q
    |||||||| ||||||||||||||||||| ||||| | ||||||||||| ||||||||||||  ||||||||||||||| ||| |||| ||||||||||||    
T  9431 gtcttgtttgaatctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatcgacaccatagaaaataggaaga 9530  T
Q  121 acatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaa 220  Q
    |||| |||| |  ||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||| |||    
T  9531 acatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttgataagacagcaacgaaaa 9630  T
Q  221 catgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    | ||||||| |||||||| |||||| ||||||| ||||||  ||||||| ||| |||||    
T  9631 cctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaaga 9689  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 31501694 - 31501424
Alignment:
Q  9 caccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataa 108  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| | | |||||||||||||||     
T  31501694 caccatctgagagtcttgttggaatatttgttcatgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatag 31501595  T
Q  109 aaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaaga 208  Q
    |||| ||| |||||||||||||   || | |  | |||||||   ||||| ||||||||||| | ||||||  |||||||||||||||| ||||||| ||    
T  31501594 aaaacaggcagaacatgttttttagatacgtggacgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcatagttccttgagagga 31501495  T
Q  209 ctgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    | || ||  ||| || |||   ||| ||||| ||||||||||| ||| ||||  ||||||||||| |||||    
T  31501494 ccgcaacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatggattcaccttttggaaga 31501424  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 31496524 - 31496254
Alignment:
Q  9 caccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataa 108  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||  |||||| |||||||||||     
T  31496524 caccatctgagagtcttgttggaatctttgttcatgtttgacaaatgcttcaccataaattccactttgctttcgcaccatagaagggtcaacatcatag 31496425  T
Q  109 aaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaaga 208  Q
    |||| ||| |||||||||||||   || |||  |  ||||||   ||||| ||||||||||| | |||| | |||||| |||||||||| ||||| ||||    
T  31496424 aaaacaggcagaacatgttttttagataccttgacccattcaaggatcttttctaattcttgcaagcacgaagttgagaaagcatagttccttgataaga 31496325  T
Q  209 ctgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaaga 279  Q
    |  | ||  |||| |||||  |||| ||||| | ||| |||| || ||||||  ||||||||||| |||||    
T  31496324 ccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaaga 31496254  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 31476584 - 31476469
Alignment:
Q  9 caccatttgaaagtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataa 108  Q
    |||||||||| ||||||||| |||||| ||| |||||| |||||| ||||| | |||||| ||| |||||||||| |||  ||||||||||||||||||     
T  31476584 caccatttgagagtcttgtttgaatctgtgtccatgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatcaacatcatag 31476485  T
Q  109 aaaataggaagaacat 124  Q
    || | ||| |||||||    
T  31476484 aacacaggtagaacat 31476469  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 31020394 - 31020497
Alignment:
Q  20 agtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaag 119  Q
    |||| ||||||||| ||||||||||||||  ||| ||||| |  ||||||||  |||| | ||  |||||||||||||||||||||||||||| ||||||    
T  31020394 agtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaag 31020493  T
Q  120 aaca 123  Q
    ||||    
T  31020494 aaca 31020497  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31489158 - 31489055
Alignment:
Q  20 agtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaag 119  Q
    |||| ||||||||| ||||||||||||||  ||| ||||| |  ||||||||  |||| | ||  |||||||||||||||||||||||||||| ||||||    
T  31489158 agtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaag 31489059  T
Q  120 aaca 123  Q
    ||||    
T  31489058 aaca 31489055  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 31030280 - 31030378
Alignment:
Q  25 tgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaaca 123  Q
    ||||||||| ||||||||||||||  ||| ||||| |  ||||||||  |||| | ||  |||||||||||||||||||||||||||| ||||||||||    
T  31030280 tgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaaca 31030378  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 31159801 - 31159899
Alignment:
Q  25 tgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaaca 123  Q
    ||||||||||||| ||| |||||| |||  ||||| | |||| ||||| |||| | ||  ||||||||||||||||||||||| |||||||| ||||||    
T  31159801 tgttggaatctttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaaca 31159899  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 31162173 - 31162278
Alignment:
Q  20 agtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaag 119  Q
    |||||||||||||||||||||||||||||| ||| |||||   |||| ||||  |||| | ||  | |||| |||||||||||||||| |||| ||| ||    
T  31162173 agtcttgttggaatctttgttcatgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcag 31162272  T
Q  120 aacatg 125  Q
    ||||||    
T  31162273 aacatg 31162278  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 31529056 - 31529164
Alignment:
Q  21 gtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaaga 120  Q
    |||||||| ||||||||  ||||||| | |||| ||||    |||| | |||||||||||||| ||||| ||||||||||||||||| |||| ||| |||    
T  31529056 gtcttgtttgaatctttcctcatgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 31529155  T
Q  121 acatgtttt 129  Q
    ||| |||||    
T  31529156 acacgtttt 31529164  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 31244557 - 31244422
Alignment:
Q  73 ctttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaa 172  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||| ||||||  || | ||  | | ||||||||||||  ||||||  ||| ||| |  |    
T  31244557 ctttgctttcgcacctcagatggatccacatcatagaaaataggtagaacaatttgtcctgttacttcaatgcattcagcaatctttactagttccttca 31244458  T
Q  173 ggcaccatgttgaggaagcatagtttcttgagaaga 208  Q
     |||||| ||||| ||||||||||| ||||| ||||    
T  31244457 agcaccacgttgaagaagcatagttccttgaaaaga 31244422  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 31159950 - 31159984
Alignment:
Q  174 gcaccatgttgaggaagcatagtttcttgagaaga 208  Q
    ||||||||||||||||||||||||| |||||||||    
T  31159950 gcaccatgttgaggaagcatagttttttgagaaga 31159984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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