View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_high_20 (Length: 303)
Name: NF9612_high_20
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 170130 - 170405
Alignment:
| Q |
18 |
tatatagctgctataattctgtgtatttcttcattgaattaaagcttacagtgttaccgtccaaattacaagaattcctctgaacaatgcaacgagggac |
117 |
Q |
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| T |
170130 |
tatatagctgctataattctgtgtatttcttcattgaattaaagtttacagtgttaccgtccaaattacaagaattcctctgaacaatgcaacgagggac |
170229 |
T |
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| Q |
118 |
tatccccttatatccctagtcactcctggcaataattgcgcctaacacatgtttgggcaaacacaagggcatggactgacgaacctctgacatataccca |
217 |
Q |
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| T |
170230 |
tatccccctatatccctagtcactcctagcaataattgggcctaacacatgtttgggcaaacacaagggcatggactgacgaacctctgacatataccca |
170329 |
T |
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| Q |
218 |
acttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttg |
293 |
Q |
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| T |
170330 |
acttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttg |
170405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 9837827 - 9837758
Alignment:
| Q |
207 |
acatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatga |
276 |
Q |
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| T |
9837827 |
acatatactcaacttctacatttgtctttaaacactaatcaaacgagaacttaaaatgatttgtcaatga |
9837758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 33559652 - 33559721
Alignment:
| Q |
198 |
gaacctctgacatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatt |
267 |
Q |
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| T |
33559652 |
gaacctttgacatatacttaacttctgcatctatctttggacactaatccaatgagagcttcaagtgatt |
33559721 |
T |
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