View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_high_21 (Length: 292)
Name: NF9612_high_21
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 53049125 - 53049397
Alignment:
| Q |
1 |
agatacttccaaatcaaaccctgagacaaatagtgacaatgagaattctacgggcagccgagaagaatctcttactatacaggaagatgtgaacgagggt |
100 |
Q |
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| T |
53049125 |
agatacttccaaatcaaaccctgagacaaacagtgacaatgagaattctacgggcagccgagaagaatctcttactatacaggaagatgtgaacgagggt |
53049224 |
T |
|
| Q |
101 |
gaacctgaagataatgaaggtcttccagtttacccatatgaaagtgttaaaacagattctacagatcctatgccagacattgacgtgactaaacgagagg |
200 |
Q |
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| T |
53049225 |
gaacctgaagataatgaaggtcttccagtttacccatatgaaagtgttaaaacagattctacagatcctatgccagacattgacgtgactaaacgagagg |
53049324 |
T |
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| Q |
201 |
tatactattatgacaatgtcaacatataaccttgtcnnnnnnnnnnctttactttattctttacaggttaaat |
273 |
Q |
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| T |
53049325 |
tatactatcatgacaatgtcaacatataaccttgtcttttttttttctttactttattctttacaggttaaat |
53049397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 15956896 - 15956758
Alignment:
| Q |
64 |
agaatctcttactatacaggaagatgtgaacgagggtgaacctgaagataatgaaggtcttccagtttacccatatgaaagtgttaaaacagattctaca |
163 |
Q |
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|||||||||||| ||| | ||||||||||| || || ||| |||||||| | |||||||| | |||||||||||||| | |||||| | |||||| |
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| T |
15956896 |
agaatctcttaccatagaagaagatgtgaaagaaggcgaagctgaagatgaggaaggtctcctgatttacccatatgaacgccttaaaataacatctaca |
15956797 |
T |
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| Q |
164 |
gatcctatgccagacattgacgtgactaaacgagaggta |
202 |
Q |
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| T |
15956796 |
gatcctgtgccagacattgatgtaactaaaagagaggta |
15956758 |
T |
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